ARB
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This is the complete list of members for AP_tree_edge, including all inherited members.
Age() const | AP_tree_edge | inline |
AP_main::destroyEdge(AP_tree_edge *edge) | AP_tree_edge | friend |
AP_tree_edge(AP_tree_nlen *node1, AP_tree_nlen *node2) | AP_tree_edge | |
AP_tree_nlen class | AP_tree_edge | friend |
calc_branchlengths() | AP_tree_edge | inline |
destroy(AP_tree_nlen *root) | AP_tree_edge | static |
EdgeChain class | AP_tree_edge | friend |
has_marked() const | AP_tree_edge | inline |
indexOf(const AP_tree_nlen *n) const | AP_tree_edge | inline |
initialize(AP_tree_nlen *root) | AP_tree_edge | static |
is_leaf_edge() const | AP_tree_edge | inline |
is_root_edge() const | AP_tree_edge | inline |
isConnectedTo(const AP_tree_nlen *n) const | AP_tree_edge | inline |
kl_rec(const KL_params &KL, const int rec_depth, Mutations pars_best) | AP_tree_edge | |
mixTree(int repeat, int percent, EdgeSpec whichEdges) | AP_tree_edge | |
next_to_folded_group() const | AP_tree_edge | inline |
nni_mutPerSite(Mutations pars_one, AP_BL_MODE mode, MutationsPerSite *mps) | AP_tree_edge | |
nni_rec(EdgeSpec whichEdges, AP_BL_MODE mode, AP_tree_nlen *skipNode, bool includeStartEdge) | AP_tree_edge | |
Noncopyable() | Noncopyable | inlineprivate |
notSonNode() const | AP_tree_edge | inline |
operator<<(std::ostream &, const AP_tree_edge *) | AP_tree_edge | friend |
otherNode(const AP_tree_nlen *n) const | AP_tree_edge | inline |
relink(AP_tree_nlen *node1, AP_tree_nlen *node2) | AP_tree_edge | protected |
ResourceStack::destroy_edges() | AP_tree_edge | friend |
set_root() | AP_tree_edge | inline |
set_visited(bool vis) | AP_tree_edge | inline |
sonNode() const | AP_tree_edge | inline |
StackFrameData::makeEdge(AP_tree_nlen *n1, AP_tree_nlen *n2) | AP_tree_edge | friend |
unlink() | AP_tree_edge | protected |
~AP_tree_edge() | AP_tree_edge | protected |