ARB
AP_tree_edge Member List

This is the complete list of members for AP_tree_edge, including all inherited members.

Age() const AP_tree_edgeinline
AP_main::destroyEdge(AP_tree_edge *edge)AP_tree_edgefriend
AP_tree_edge(AP_tree_nlen *node1, AP_tree_nlen *node2)AP_tree_edge
AP_tree_nlen classAP_tree_edgefriend
calc_branchlengths()AP_tree_edgeinline
destroy(AP_tree_nlen *root)AP_tree_edgestatic
EdgeChain classAP_tree_edgefriend
has_marked() const AP_tree_edgeinline
indexOf(const AP_tree_nlen *n) const AP_tree_edgeinline
initialize(AP_tree_nlen *root)AP_tree_edgestatic
is_leaf_edge() const AP_tree_edgeinline
is_root_edge() const AP_tree_edgeinline
isConnectedTo(const AP_tree_nlen *n) const AP_tree_edgeinline
kl_rec(const KL_params &KL, const int rec_depth, Mutations pars_best)AP_tree_edge
mixTree(int repeat, int percent, EdgeSpec whichEdges)AP_tree_edge
next_to_folded_group() const AP_tree_edgeinline
nni_mutPerSite(Mutations pars_one, AP_BL_MODE mode, MutationsPerSite *mps)AP_tree_edge
nni_rec(EdgeSpec whichEdges, AP_BL_MODE mode, AP_tree_nlen *skipNode, bool includeStartEdge)AP_tree_edge
Noncopyable()Noncopyableinlineprivate
notSonNode() const AP_tree_edgeinline
operator<<(std::ostream &, const AP_tree_edge *)AP_tree_edgefriend
otherNode(const AP_tree_nlen *n) const AP_tree_edgeinline
relink(AP_tree_nlen *node1, AP_tree_nlen *node2)AP_tree_edgeprotected
ResourceStack::destroy_edges()AP_tree_edgefriend
set_root()AP_tree_edgeinline
set_visited(bool vis)AP_tree_edgeinline
sonNode() const AP_tree_edgeinline
StackFrameData::makeEdge(AP_tree_nlen *n1, AP_tree_nlen *n2)AP_tree_edgefriend
unlink()AP_tree_edgeprotected
~AP_tree_edge()AP_tree_edgeprotected