RNA3D_StructureData.hxx File Reference

#include <arbdb.h>

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Classes
struct	Struct2Dplus3D
struct	Struct2Dinfo
struct	Struct3Dinfo
struct	HelixNrInfo
struct	CurrSpecies
struct	Insertions
struct	Structure3D

Macros
#define	SAI   0
#define	SEARCH   1
#define	SSU_16S   1
#define	LSU_23S   2
#define	LSU_5S   3
#define	_1PNU   1
#define	_1VOR   2
#define	_1C2W   3

Enumerations
enum	{   STRUCTURE_BACKBONE = 300, STRUCTURE_BACKBONE_CLR, HELIX_NUMBERS, HELIX_NUMBERS_POINTS,   HELIX_A, HELIX_G, HELIX_C, HELIX_U,   UNPAIRED_HELIX_A, UNPAIRED_HELIX_G, UNPAIRED_HELIX_C, UNPAIRED_HELIX_U,   NON_HELIX_A, NON_HELIX_G, NON_HELIX_C, NON_HELIX_U,   STRUCTURE_POS, STRUCTURE_POS_ANCHOR, MAP_SPECIES_BASE_DIFFERENCE, MAP_SPECIES_BASE_DIFFERENCE_POS,   MAP_SPECIES_BASE_DIFFERENCE_POS_ANCHOR, MAP_SPECIES_BASE_A, MAP_SPECIES_BASE_G, MAP_SPECIES_BASE_C,   MAP_SPECIES_BASE_U, MAP_SPECIES_DELETION, MAP_SPECIES_MISSING, MAP_SPECIES_INSERTION_POINTS,   MAP_SPECIES_INSERTION_BASES, MAP_SPECIES_INSERTION_BASES_ANCHOR, MAP_SAI_TO_STRUCTURE, MAP_SEARCH_STRINGS_TO_STRUCTURE,   MAP_SEARCH_STRINGS_BACKBONE, ECOLI_CURSOR_POSITION, ECOLI_TERTIARY_INTRACTION_PSEUDOKNOTS, ECOLI_TERTIARY_INTRACTION_TRIPLE_BASES }

Macro Definition Documentation

#define SAI   0

Definition at line 18 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::MapSaiToEcoliTemplate(), and ValidSearchColor().

#define SEARCH   1

Definition at line 19 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::MapSearchStringsToEcoliTemplate(), and ValidSearchColor().

#define SSU_16S   1

Definition at line 21 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::calc_helix_count(), CreateDisplayHelices_window(), Structure3D::FindTypeOfRNA(), Structure3D::GenerateDisplayLists(), Structure3D::GenerateTertiaryInteractionsDispLists(), Structure3D::GetSecondaryStructureInfo(), and Structure3D::ReadCoOrdinateFile().

#define LSU_23S   2

Definition at line 22 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::calc_helix_count(), CreateDisplayHelices_window(), CreateRNA3DMainWindow(), Structure3D::FindTypeOfRNA(), Structure3D::GenerateDisplayLists(), Structure3D::GenerateTertiaryInteractionsDispLists(), Structure3D::GetSecondaryStructureInfo(), and Structure3D::ReadCoOrdinateFile().

#define LSU_5S   3

Definition at line 23 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::calc_helix_count(), CreateDisplayHelices_window(), Structure3D::FindTypeOfRNA(), Structure3D::GenerateDisplayLists(), Structure3D::GenerateTertiaryInteractionsDispLists(), Structure3D::GetSecondaryStructureInfo(), and Structure3D::ReadCoOrdinateFile().

#define _1PNU   1

Definition at line 25 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::ReadCoOrdinateFile().

#define _1VOR   2

Definition at line 26 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::ReadCoOrdinateFile().

#define _1C2W   3

Definition at line 27 of file RNA3D_StructureData.hxx.

Referenced by Structure3D::ReadCoOrdinateFile().

Enumeration Type Documentation

anonymous enum

Enumerator
STRUCTURE_BACKBONE
STRUCTURE_BACKBONE_CLR
HELIX_NUMBERS
HELIX_NUMBERS_POINTS
HELIX_A
HELIX_G
HELIX_C
HELIX_U
UNPAIRED_HELIX_A
UNPAIRED_HELIX_G
UNPAIRED_HELIX_C
UNPAIRED_HELIX_U
NON_HELIX_A
NON_HELIX_G
NON_HELIX_C
NON_HELIX_U
STRUCTURE_POS
STRUCTURE_POS_ANCHOR
MAP_SPECIES_BASE_DIFFERENCE
MAP_SPECIES_BASE_DIFFERENCE_POS
MAP_SPECIES_BASE_DIFFERENCE_POS_ANCHOR
MAP_SPECIES_BASE_A
MAP_SPECIES_BASE_G
MAP_SPECIES_BASE_C
MAP_SPECIES_BASE_U
MAP_SPECIES_DELETION
MAP_SPECIES_MISSING
MAP_SPECIES_INSERTION_POINTS
MAP_SPECIES_INSERTION_BASES
MAP_SPECIES_INSERTION_BASES_ANCHOR
MAP_SAI_TO_STRUCTURE
MAP_SEARCH_STRINGS_TO_STRUCTURE
MAP_SEARCH_STRINGS_BACKBONE
ECOLI_CURSOR_POSITION
ECOLI_TERTIARY_INTRACTION_PSEUDOKNOTS
ECOLI_TERTIARY_INTRACTION_TRIPLE_BASES

Definition at line 30 of file RNA3D_StructureData.hxx.