ARB
GDE_global.cxx
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1 // ================================================================ //
2 // //
3 // File : GDE_global.cxx //
4 // Purpose : Global data for GDE interface //
5 // //
6 // Institute of Microbiology (Technical University Munich) //
7 // http://www.arb-home.de/ //
8 // //
9 // ================================================================ //
10 
13 char FileName[80];
14 
15 // Months of the year
16 const char *GDEmonth[] = {
17  "-JAN-", "-FEB-", "-MAR-", "-APR-", "-MAY-", "-JUN-",
18  "-JUL-", "-AUG-", "-SEP-", "-OCT-", "-NOV-", "-DEC-"
19 };
20 
21 // Tables for DNA/RNA <--> ASCII translation
22 int Default_RNA_Trans[128] = {
23  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'U', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // Upper
24  '.', 'a', 'c', 'm', 'g', 'r', 's', 'v', 'u', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // lower
25  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'U', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // Upper select
26  '.', 'a', 'c', 'm', 'g', 'r', 's', 'v', 'u', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // lwr select
27  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'U', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // extended
28  '~', 'a', 'c', 'm', 'g', 'r', 's', 'v', 'u', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // extended
29  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'U', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // extended
30  '~', 'a', 'c', 'm', 'g', 'r', 's', 'v', 'u', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // extended
31 };
32 
33 int Default_DNA_Trans[128] = {
34  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'T', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // Upper
35  '.', 'a', 'c', 'm', 'g', 'r', 's', 'v', 't', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // lower
36  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'T', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // Upper select
37  '.', 'a', 'c', 'm', 'g', 'r', 's', 'v', 't', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // lwr select
38  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'T', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // extended
39  '~', 'a', 'c', 'm', 'g', 'r', 's', 'v', 't', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // extended
40  '-', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'T', 'W', 'Y', 'H', 'K', 'D', 'B', 'N', // extended
41  '~', 'a', 'c', 'm', 'g', 'r', 's', 'v', 't', 'w', 'y', 'h', 'k', 'd', 'b', 'n', // extended
42 };
43 
44 int Default_NA_RTrans[128] = {
45  0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
46  0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0x10, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
47  // Upper case alpha
48  0x01, 0xe, 0x02, 0x0d, 0, 0, 0x04, 0x0b, 0, 0, 0x0c, 0, 0x03, 0x0f, 0, 0, 0, 0x05, 0x06, 0x08,
49  0x08, 0x07, 0x09, 0x0f, 0xa, 0, 0, 0, 0, 0, 0, 0,
50  // Lower case alpha
51  0x11, 0x1e, 0x12, 0x1d, 0, 0, 0x14, 0x1b, 0, 0, 0x1c, 0, 0x13, 0x1f, 0, 0, 0, 0x15, 0x16, 0x18,
52  0x18, 0x17, 0x19, 0x1f, 0x1a, 0, 0, 0, 0, 0x10, 0
53 };
54 
55 
56 // Character->color lookup table
57 
59  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
60  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
61  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
62  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
63  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
64  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
65  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13,
66  13, 3, 6, 13, 8, 13, 13, 13, 5, 13, 13, 13, 13, 13, 13, 13
67 };
68 
70  12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12,
71  12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12,
72  12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12,
73  12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12,
74  12, 2, 8, 3, 8, 8, 6, 2, 4, 5, 12, 4, 5, 5, 8, 12, 2,
75  8, 4, 2, 2, 12, 5, 6, 12, 6, 8, 12, 12, 12, 12, 12, 12,
76  2, 8, 3, 8, 8, 6, 2, 4, 5, 12, 4, 5, 5, 8, 12, 2,
77  8, 4, 2, 2, 12, 5, 6, 12, 6, 8, 12, 12, 12, 12, 12
78 };
79 
int Default_DNA_Trans[128]
Definition: GDE_global.cxx:33
int Default_PROColor_LKUP[128]
Definition: GDE_global.cxx:69
int Default_NA_RTrans[128]
Definition: GDE_global.cxx:44
char FileName[80]
Definition: GDE_global.cxx:13
const char * GDEmonth[]
Definition: GDE_global.cxx:16
int FileFormat
Definition: GDE_global.cxx:12
int DataType
Definition: GDE_global.cxx:11
int Default_RNA_Trans[128]
Definition: GDE_global.cxx:22
int Default_NAColor_LKUP[128]
Definition: GDE_global.cxx:58