ARB
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This is the complete list of members for ALI_MAP, including all inherited members.
ALI_MAP(unsigned long first_seq_base, unsigned long last_seq_base, unsigned long first_ref_base, unsigned long last_ref_base) | ALI_MAP | |
ALI_MAP(ALI_MAP *map) | ALI_MAP | |
first_base() | ALI_MAP | inline |
first_reference_base() | ALI_MAP | inline |
have_undefined() | ALI_MAP | inline |
insert_marker() | ALI_MAP | |
insertations() | ALI_MAP | inline |
inverse_without_inserts() | ALI_MAP | |
is_equal(ALI_MAP *map) | ALI_MAP | inline |
is_inserted(unsigned long base) | ALI_MAP | inline |
is_konsistent() | ALI_MAP | |
is_undefined(unsigned long base) | ALI_MAP | inline |
last_base() | ALI_MAP | inline |
last_reference_base() | ALI_MAP | inline |
Noncopyable() | Noncopyable | inlineprivate |
position(unsigned long base) | ALI_MAP | inline |
print() | ALI_MAP | inline |
sequence(ALI_NORM_SEQUENCE *ref_seq) | ALI_MAP | |
sequence_without_inserts(ALI_NORM_SEQUENCE *ref_seq) | ALI_MAP | |
set(unsigned long base, unsigned long pos, int insert=-1) | ALI_MAP | inline |
undefine(unsigned long base) | ALI_MAP | inline |
unundefine(unsigned long base) | ALI_MAP | inline |
~ALI_MAP() | ALI_MAP | inline |