ST_ML Member List

This is the complete list of members for ST_ML, including all inherited members.

calc_st_ml(const char *tree_name, const char *alignment_name, const char *species_names, int marked_only, ColumnStat *colstat, const WeightedFilter *weighted_filter) __ATTR__USERESULT	ST_ML
cleanup()	ST_ML
clear_all()	ST_ML
count_species_in_tree() const	ST_ML
create_column_statistic(AW_root *awr, const char *awarname, AW_awar *awar_default_alignment)	ST_ML
do_postcalc_callback()	ST_ML	inline
find_node_by_name(const char *species_name)	ST_ML
get_alignment_length() const	ST_ML
get_base_frequency_at(size_t pos) const	ST_ML	inline
get_color_string(const char *species_name, AP_tree *node, size_t start_ali_pos, size_t end_ali_pos)	ST_ML
get_column_statistic()	ST_ML	inline
get_filter() const	ST_ML
get_filtered_length() const	ST_ML
get_first_pos() const	ST_ML	inline
get_gb_main() const	ST_ML	inline
get_gbt_tree() const	ST_ML
get_inv_base_frequencies() const	ST_ML	inline
get_last_pos() const	ST_ML	inline
get_matrix_for(int distance)	ST_ML	inline
get_ml_vectors(const char *species_name, AP_tree *node, size_t start_ali_pos, size_t end_ali_pos)	ST_ML
get_rate_at(size_t pos) const	ST_ML	inline
get_step_size() const	ST_ML	inline
Noncopyable()	Noncopyable	inlineprivate
refresh_needed()	ST_ML
set_modified(int *what=NULp)	ST_ML
set_postcalc_callback(WindowCallbackSimple postcalc_cb_, AW_window *cb_window_)	ST_ML	inline
set_refresh()	ST_ML
ST_ML(GBDATA *gb_main)	ST_ML
update_ml_likelihood(char *result[4], int &latest_update, const char *species_name, AP_tree *node)	ST_ML
~ST_ML()	ST_ML