SEC_helix.cxx File Reference

#include "SEC_root.hxx"
#include "SEC_helix.hxx"
#include <arbdbt.h>
#include <arb_strbuf.h>

Include dependency graph for SEC_helix.cxx:

Go to the source code of this file.

Functions
char *	SEC_xstring_to_foldedHelixList (const char *x_string, size_t xlength, const BI_helix *helix, GB_ERROR &error)
char *	SEC_foldedHelixList_to_xstring (const char *foldedHelices, size_t xlength, const BI_helix *helix, GB_ERROR &error)
char *	old_decode_xstring_rel_helix (GB_CSTR rel_helix, size_t xlength, const BI_helix *helix, int *no_of_helices_ptr)

Function Documentation

char* SEC_xstring_to_foldedHelixList	(	const char *	x_string,
		size_t	xlength,
		const BI_helix *	helix,
		GB_ERROR &	error
	)

Definition at line 51 of file SEC_helix.cxx.

References GBS_strstruct::cat(), error(), GBS_global_string(), BI_helix::helixNr(), BI_helix::is_pairpos(), GBS_strstruct::nprintf(), NULp, GBS_strstruct::put(), GBS_strstruct::release(), and sec_assert.

Referenced by export_structure_to_file().

char* SEC_foldedHelixList_to_xstring	(	const char *	foldedHelices,
		size_t	xlength,
		const BI_helix *	helix,
		GB_ERROR &	error
	)

Definition at line 91 of file SEC_helix.cxx.

References ARB_strpartdup(), BI_helix::first_position(), GBS_global_string(), BI_helix::last_position(), NULp, and sec_assert.

Referenced by import_structure_from_file().

char* old_decode_xstring_rel_helix	(	GB_CSTR	rel_helix,
		size_t	xlength,
		const BI_helix *	helix,
		int *	no_of_helices_ptr
	)

Definition at line 138 of file SEC_helix.cxx.

References BI_helix::helixNr(), BI_helix::is_pairpos(), NULp, sec_assert, and BI_helix::size().

Referenced by import_structure_from_file().