AP_smatrix Class Reference

#include <AP_matrix.hxx>

Inheritance diagram for AP_smatrix:

Collaboration diagram for AP_smatrix:

Public Member Functions
	AP_smatrix (size_t si)
	~AP_smatrix ()
void	set (size_t i, size_t j, AP_FLOAT val)
AP_FLOAT	fast_get (size_t i, size_t j) const
AP_FLOAT	get (size_t i, size_t j) const
AP_FLOAT	get_max_value () const
size_t	size () const

Detailed Description

Definition at line 32 of file AP_matrix.hxx.

Constructor & Destructor Documentation

AP_smatrix::AP_smatrix ( size_t  si )

explicit

Definition at line 24 of file AP_matrix.cxx.

AP_smatrix::~AP_smatrix

(

)

Definition at line 39 of file AP_matrix.cxx.

Member Function Documentation

void AP_smatrix::set ( size_t  i, size_t  j, AP_FLOAT  val  )

inline

Definition at line 43 of file AP_matrix.hxx.

Referenced by DI_MATRIX::calculate(), DI_MATRIX::compress(), DI_MATRIX::extract_from_tree(), and di_protdist::makedists().

AP_FLOAT AP_smatrix::fast_get ( size_t  i, size_t  j  ) const

inline

Definition at line 45 of file AP_matrix.hxx.

References ap_assert.

Referenced by PH_NEIGHBOURJOINING::PH_NEIGHBOURJOINING().

AP_FLOAT AP_smatrix::get ( size_t  i, size_t  j  ) const

inline

Definition at line 46 of file AP_matrix.hxx.

Referenced by DI_MATRIX::compress(), di_mark_by_distance(), and DI_MATRIX::save().

AP_FLOAT AP_smatrix::get_max_value

(

)

const

Definition at line 43 of file AP_matrix.cxx.

References max.

Referenced by PH_NEIGHBOURJOINING::PH_NEIGHBOURJOINING().

size_t AP_smatrix::size ( ) const

inline

Definition at line 50 of file AP_matrix.hxx.

Referenced by di_calculate_tree_cb(), neighbourjoining(), and PH_NEIGHBOURJOINING::PH_NEIGHBOURJOINING().

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The documentation for this class was generated from the following files:

• SL/MATRIX/AP_matrix.hxx
• SL/MATRIX/AP_matrix.cxx