NT_tree_cmp.h File Reference

#include <arbdb_base.h>
#include "NT_local.h"

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Classes
class	RatioLimits
class	GroupPenalty
class	GroupMatchScorer

Enumerations
enum	GroupTransferMode { COMPARE_TOPOLOGY, REMOVE_EXISTING_GROUPS, KEEP_OLD_NAMES }
enum	GroupsToTransfer { XFER_ALL_GROUPS, XFER_GROUPS_WITH_MARKED }

Functions
GB_ERROR	NTREE_move_tree_info (GBDATA *gb_main, const char *tree_source, const char *tree_dest, const char *log_file, GroupTransferMode mode, GroupsToTransfer what, const GroupMatchScorer &scorer, const char *aci)

Enumeration Type Documentation

enum GroupTransferMode

Enumerator
COMPARE_TOPOLOGY
REMOVE_EXISTING_GROUPS
KEEP_OLD_NAMES

Definition at line 21 of file NT_tree_cmp.h.

enum GroupsToTransfer

Enumerator
XFER_ALL_GROUPS
XFER_GROUPS_WITH_MARKED

Definition at line 27 of file NT_tree_cmp.h.

Function Documentation

GB_ERROR NTREE_move_tree_info	(	GBDATA *	gb_main,
		const char *	tree_source,
		const char *	tree_dest,
		const char *	log_file,
		GroupTransferMode	mode,
		GroupsToTransfer	what,
		const GroupMatchScorer &	scorer,
		const char *	aci
	)

Definition at line 603 of file NT_tree_cmp.cxx.

References GroupMatchScorer::check_validity(), COMPARE_TOPOLOGY, TreeNode::count_clades(), AP_tree::count_leafs(), arb_progress::done(), error(), SpecSetRegistry::find_best_matches_info(), SpecSetRegistry::finish(), fputs(), GB_begin_transaction(), GB_end_transaction(), GB_export_errorf(), GB_IO_error(), GBK_terminatef(), GBS_global_string_copy(), GBT_log_to_tree_remark(), GBT_overwrite_tree(), ARB_seqtree_root::get_gb_tree(), TreeNode::get_root_node(), KEEP_OLD_NAMES, leafs_2_nodes(), ARB_seqtree_root::linkToDB(), AP_tree_root::loadFromDB(), nt_assert, NULp, SpecSetRegistry::registerTree(), REMOVE_EXISTING_GROUPS, ROOTED, SpecSetRegistry::search_best_match(), SpecSet::set_node, TreeNode::set_root(), SpecSetRegistry::setScorer(), arb_progress::subtitle(), swap(), SpecSetRegistry::write_node_information(), and XFER_GROUPS_WITH_MARKED.

Referenced by ad_move_tree_info().