This is the complete list of members for RootSynchronizer, including all inherited members.

add(SizeAwareTree &tree, const char treename)	RootSynchronizer	inline
allTreesDeconstructed() const	RootSynchronizer	inline
beginDeconstructionPhase()	RootSynchronizer
calcEdgeDistance(int i1, const SizeAwareTree n1, int i2, const SizeAwareTree n2) const	RootSynchronizer
calcTreeDistance(int i1, int i2) const	RootSynchronizer
deconstruct_all_trees(bool provideProgress)	RootSynchronizer
deconstructionPhase() const	RootSynchronizer	inline
find_best_matching_PART_in(int &best_dist, int &best_idx, const PART part, const DeconstructedTree &in, const PART tree_part, const PART *tree_in, bool provideProgress)	RootSynchronizer	static
find_best_root_candidate(int inTree, int accordingToTree, int &best_dist, bool provideProgress)	RootSynchronizer
find_good_roots_for_trees(const int MAX_DEPTH, arb_progress *progress=NULp)	RootSynchronizer
find_worst_matching_PART_in(int &worst_dist, int &worst_idx, const PART part, const DeconstructedTree &in, const PART tree_part, const PART *tree_in)	RootSynchronizer	static
get_current_roots() const	RootSynchronizer
get_DeconstructedTree(int treeIdx)	RootSynchronizer	inline
get_edge_PART(int treeIdx, const SizeAwareTree *sonOfEdge) const	RootSynchronizer	inline
get_innermost_edges() const	RootSynchronizer
get_species_count() const	TreeContainer	inline
get_species_names(ConstStrArray &species_names) const	TreeContainer	inline
get_SpeciesSpace() const	RootSynchronizer	inline
get_tree(int idx) const	TreeContainer	inline
get_tree_count() const	TreeContainer	inline
get_tree_info(int idx) const	TreeContainer	inline
get_tree_PART(int treeIdx) const	RootSynchronizer	inline
minDistanceSum() const	RootSynchronizer
RootSynchronizer()	RootSynchronizer	inline
take_tree(int idx)	RootSynchronizer	inline
valid_tree_index(int idx) const	TreeContainer	inline
~TreeContainer()	TreeContainer	inline