base.c File Reference

#include "base.h"
#include <ctype.h>

Include dependency graph for base.c:

Go to the source code of this file.

Functions
void	initBaseLookups ()

Variables
char	helixBaseChar [BASECHARS] = { 'A', 'C', 'G', 'T', '=' }
char	loopBaseChar [BASECHARS] = { 'a', 'c', 'g', 't', '-' }
int	basesArePairing [BASECHARS][BASECHARS]
int	baseCharType [MAXBASECHAR+1]
int	charIsDelete [MAXBASECHAR+1]
int	charIsHelical [MAXBASECHAR+1]

Function Documentation

void initBaseLookups

(

)

Definition at line 20 of file base.c.

References assert, BASECHARS, loopBaseChar, and MAXBASECHAR.

Referenced by ARB_main().

Variable Documentation

char helixBaseChar[BASECHARS] = { 'A', 'C', 'G', 'T', '=' }

Definition at line 4 of file base.c.

Referenced by createOriginRNS(), and mutateRNS().

char loopBaseChar[BASECHARS] = { 'a', 'c', 'g', 't', '-' }

Definition at line 5 of file base.c.

Referenced by createOriginRNS(), initBaseLookups(), and mutateRNS().

int basesArePairing[BASECHARS][BASECHARS]

Initial value:

= {

    { 0, 0, 0, 1, 0 }, 
    { 0, 0, 1, 0, 0 }, 
    { 0, 1, 0, 0, 0 }, 
    { 1, 0, 0, 0, 0 }, 
    { 0, 0, 0, 0, 0 }, 
}

Definition at line 7 of file base.c.

int baseCharType[MAXBASECHAR+1]

Definition at line 16 of file base.c.

int charIsDelete[MAXBASECHAR+1]

Definition at line 16 of file base.c.

int charIsHelical[MAXBASECHAR+1]

Definition at line 16 of file base.c.