adRevCompl.cxx File Reference
#include "arbdbt.h"
#include <cctype>
Include dependency graph for adRevCompl.cxx:

Go to the source code of this file.


static char GBT_complementNucleotide (char c, char T_or_U)
charGBT_reverseNucSequence (const char *s, int len)
charGBT_complementNucSequence (const char *s, int len, char T_or_U)
NOT4PERL GB_ERROR GBT_determine_T_or_U (GB_alignment_type alignment_type, char *T_or_U, const char *supposed_target)
NOT4PERL void GBT_reverseComplementNucSequence (char *seq, long length, char T_or_U)

Function Documentation

static char GBT_complementNucleotide ( char  c,
char  T_or_U 

Definition at line 15 of file adRevCompl.cxx.

Referenced by GBT_complementNucSequence(), and GBT_reverseComplementNucSequence().

char* GBT_reverseNucSequence ( const char s,
int  len 

Definition at line 66 of file adRevCompl.cxx.

Referenced by revcomp_op::operate(), and SearchTree::SearchTree().

char* GBT_complementNucSequence ( const char s,
int  len,
char  T_or_U 
NOT4PERL GB_ERROR GBT_determine_T_or_U ( GB_alignment_type  alignment_type,
char T_or_U,
const char supposed_target 
NOT4PERL void GBT_reverseComplementNucSequence ( char seq,
long  length,
char  T_or_U