mem.h File Reference

#include <stdlib.h>

Include dependency graph for mem.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Macros
#define	newVector(n, s)   newBlock((n)*(s))
#define	freeBlock(v)   freeBlock_((void **)(v))
#define	newDoubleVector(n)   (double *)(newVector((size_t)(n),sizeof(double)))
#define	newFloatVector(n)   (float *)(newVector((size_t)(n),sizeof(float)))
#define	newShortVector(n)   (short *)(newVector((size_t)(n),sizeof(short)))
#define	newLongVector(n)   (long *)(newVector((size_t)(n),sizeof(long)))
#define	newIntVector(n)   (int *)(newVector((size_t)(n),sizeof(int)))
#define	newCharVector(n)   (char *)(newVector((size_t)(n),sizeof(char)))
#define	newDoubleMatrix(r, c)   (double **)(newMatrix((size_t)(r),(size_t)(c),sizeof(double)))
#define	newFloatMatrix(r, c)   (float **)(newMatrix((size_t)(r),(size_t)(c),sizeof(float)))
#define	newShortMatrix(r, c)   (short **)(newMatrix((size_t)(r),(size_t)(c),sizeof(short)))
#define	newLongMatrix(r, c)   (long **)(newMatrix((size_t)(r),(size_t)(c),sizeof(long)))
#define	newIntMatrix(r, c)   (int **)(newMatrix((size_t)(r),(size_t)(c),sizeof(int)))
#define	newCharMatrix(r, c)   (char **)(newMatrix((size_t)(r),(size_t)(c),sizeof(char)))
#define	freeMatrix(m)   freeMatrix_((void ***)(m))

Functions
void *	newBlock (size_t s)
void	freeBlock_ (void **v)
void **	newMatrix (size_t nrow, size_t ncol, size_t s)
void	freeMatrix_ (void ***m)

Macro Definition Documentation

#define newVector	(		n,
			s
	)		newBlock((n)*(s))

Definition at line 23 of file mem.h.

Referenced by Align(), and initTrnsprob().

#define freeBlock

(

v

)

freeBlock_((void **)(v))

Definition at line 25 of file mem.h.

Referenced by Align(), freeIsland(), freeMatrix_(), main(), and uninitTrnsprob().

#define newDoubleVector

(

n

)

(double *)(newVector((size_t)(n),sizeof(double)))

Definition at line 27 of file mem.h.

#define newFloatVector

(

n

)

(float *)(newVector((size_t)(n),sizeof(float)))

Definition at line 28 of file mem.h.

#define newShortVector

(

n

)

(short *)(newVector((size_t)(n),sizeof(short)))

Definition at line 29 of file mem.h.

#define newLongVector

(

n

)

(long *)(newVector((size_t)(n),sizeof(long)))

Definition at line 30 of file mem.h.

#define newIntVector

(

n

)

(int *)(newVector((size_t)(n),sizeof(int)))

Definition at line 31 of file mem.h.

#define newCharVector

(

n

)

(char *)(newVector((size_t)(n),sizeof(char)))

Definition at line 32 of file mem.h.

#define newDoubleMatrix	(		r,
			c
	)		(double **)(newMatrix((size_t)(r),(size_t)(c),sizeof(double)))

Definition at line 34 of file mem.h.

Referenced by initEntropy(), and initScore().

#define newFloatMatrix	(		r,
			c
	)		(float **)(newMatrix((size_t)(r),(size_t)(c),sizeof(float)))

Definition at line 35 of file mem.h.

#define newShortMatrix	(		r,
			c
	)		(short **)(newMatrix((size_t)(r),(size_t)(c),sizeof(short)))

Definition at line 36 of file mem.h.

#define newLongMatrix	(		r,
			c
	)		(long **)(newMatrix((size_t)(r),(size_t)(c),sizeof(long)))

Definition at line 37 of file mem.h.

#define newIntMatrix	(		r,
			c
	)		(int **)(newMatrix((size_t)(r),(size_t)(c),sizeof(int)))

Definition at line 38 of file mem.h.

#define newCharMatrix	(		r,
			c
	)		(char **)(newMatrix((size_t)(r),(size_t)(c),sizeof(char)))

Definition at line 39 of file mem.h.

#define freeMatrix

(

m

)

freeMatrix_((void ***)(m))

Definition at line 40 of file mem.h.

Referenced by Align(), uninitEntropy(), uninitScore(), and uninitTrnsprob().

Function Documentation

void* newBlock

(

size_t

s

)

Definition at line 39 of file mem.cxx.

References D, M, MINSIZE, NULp, and outOfMemory().

Referenced by Align(), newIsland(), and newMatrix().

void freeBlock_

(

void **

v

)

Definition at line 63 of file mem.cxx.

References D, M, MINSIZE, NULp, and s.

void** newMatrix	(	size_t	nrow,
		size_t	ncol,
		size_t	s
	)

Definition at line 87 of file mem.cxx.

References newBlock(), and s.

Referenced by Align(), and initTrnsprob().

void freeMatrix_

(

void ***

m

)

Definition at line 100 of file mem.cxx.

References freeBlock.