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ARB_seqtree_root Member List
This is the complete list of members for
ARB_seqtree_root
, including all inherited members.
ARB_seqtree_root
(AliView *aliView, AP_sequence *seqTempl, bool add_delete_callbacks)
ARB_seqtree_root
change_root
(TreeNode *old, TreeNode *newroot)
TreeRoot
virtual
DEFINE_READ_ACCESSORS
(TreeNode *, get_root_node, rootNode)
TreeRoot
DEFINE_TREE_ROOT_ACCESSORS
(ARB_seqtree_root, ARB_seqtree)
ARB_seqtree_root
delete_by_node
()
TreeRoot
inline
destroyNode
(TreeNode *node) const =0
TreeRoot
pure virtual
find_innermost_edge
()
TreeRoot
get_aliview
() const
ARB_seqtree_root
inline
get_filter
() const
ARB_seqtree_root
inline
get_gb_main
() const
ARB_seqtree_root
inline
get_gb_tree
() const
ARB_seqtree_root
inline
get_seqTemplate
() const
ARB_seqtree_root
inline
get_tree_name
() const
ARB_seqtree_root
inline
get_weights
() const
ARB_seqtree_root
inline
has_bootstrap
() const
TreeRoot
inline
linkToDB
(int *zombies, int *duplicates) __ATTR__USERESULT
ARB_seqtree_root
loadFromDB
(const char *name) __ATTR__USERESULT
ARB_seqtree_root
virtual
makeNode
() const =0
TreeRoot
pure virtual
predelete
()
TreeRoot
inline
protected
PREPARE_MARK_NONFINAL_CLASS
(ARB_seqtree_root)
ARB_seqtree_root
saveToDB
() __ATTR__USERESULT
ARB_seqtree_root
virtual
set_bootstrap_seen
(bool seen)
TreeRoot
inline
set_gb_tree
(GBDATA *gbTree)
ARB_seqtree_root
inline
protected
set_gb_tree_and_name
(GBDATA *gbTree, const char *name)
ARB_seqtree_root
inline
protected
tree_deleted_cb
(GBDATA *gb_tree_del)
ARB_seqtree_root
TreeRoot
(bool deleteWithNodes_)
TreeRoot
inline
explicit
unlinkFromDB
()
ARB_seqtree_root
~ARB_seqtree_root
() OVERRIDE
ARB_seqtree_root
~TreeRoot
()
TreeRoot
virtual
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