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MostLikelySeq Member List
This is the complete list of members for
MostLikelySeq
, including all inherited members.
AP_sequence
(const AliView *aliview)
AP_sequence
bind_to_species
(GBDATA *gb_species)
MostLikelySeq
cached_wbc
AP_sequence
mutable
protected
calc_out
(const MostLikelySeq *sequence_of_brother, double dist)
MostLikelySeq
calculate_ancestor
(const MostLikelySeq *lefts, double leftl, const MostLikelySeq *rights, double rightl)
MostLikelySeq
color_out
MostLikelySeq
color_out_valid_till
MostLikelySeq
do_lazy_load
() const
AP_sequence
protected
dup
() const OVERRIDE
MostLikelySeq
virtual
ensure_sequence_loaded
() const
AP_sequence
inline
forget_sequence
()
MostLikelySeq
inline
get_aliview
() const
AP_sequence
inline
get_bound_species_data
() const
MostLikelySeq
inline
get_filter
() const
AP_sequence
inline
get_sequence_length
() const
AP_sequence
inline
get_weights
() const
AP_sequence
inline
hasSequence
() const
AP_sequence
inline
is_bound_to_species
() const
AP_sequence
inline
is_up_to_date
() const
MostLikelySeq
inline
lazy_load_sequence
() const
AP_sequence
inline
mark_sequence_set
(bool is_set)
AP_sequence
inline
protected
MostLikelySeq
(const AliView *aliview, ST_ML *st_ml_)
MostLikelySeq
print
()
MostLikelySeq
sequence_change
()
MostLikelySeq
set_sequence
()
MostLikelySeq
tmp_out
MostLikelySeq
static
unbind_from_species
(bool remove_callbacks)
MostLikelySeq
AP_sequence::unbind_from_species
()
AP_sequence
~AP_sequence
()
AP_sequence
inline
virtual
~MostLikelySeq
() OVERRIDE
MostLikelySeq
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