AP_combinableSeq Member List

This is the complete list of members for AP_combinableSeq, including all inherited members.

AP_combinableSeq(const AliView *aliview)	AP_combinableSeq	inline
AP_sequence(const AliView *aliview)	AP_sequence
bind_to_species(GBDATA *gb_species)	AP_sequence
cached_wbc	AP_sequence	mutableprotected
checksum() const =0	AP_combinableSeq	pure virtual
cmp_combined(const AP_combinableSeq *other) const =0	AP_combinableSeq	pure virtual
combine_count()	AP_combinableSeq	inlinestatic
combine_seq(const AP_combinableSeq *lefts, const AP_combinableSeq *rights, char *mutation_per_site=NULp)=0	AP_combinableSeq	pure virtual
combinedEquals(const AP_combinableSeq *other) const	AP_combinableSeq	inline
count_weighted_bases() const =0	AP_combinableSeq	protectedpure virtual
do_lazy_load() const	AP_sequence	protected
dup() const =0	AP_combinableSeq	pure virtual
ensure_sequence_loaded() const	AP_sequence	inline
forget_sequence()	AP_sequence	inline
get_aliview() const	AP_sequence	inline
get_bound_species_data() const	AP_sequence	inline
get_filter() const	AP_sequence	inline
get_sequence_length() const	AP_sequence	inline
get_weights() const	AP_sequence	inline
hasSequence() const	AP_sequence	inline
inc_combine_count()	AP_combinableSeq	inlineprotectedstatic
is_bound_to_species() const	AP_sequence	inline
lazy_load_sequence() const	AP_sequence	inline
mark_sequence_set(bool is_set)	AP_sequence	inlineprotected
mutations_if_combined_with(const AP_combinableSeq *other)=0	AP_combinableSeq	pure virtual
noncounting_combine_seq(const AP_combinableSeq *lefts, const AP_combinableSeq *rights)	AP_combinableSeq	inline
partial_match(const AP_combinableSeq *part, long *overlap, long *penalty) const =0	AP_combinableSeq	pure virtual
set(const char *sequence)=0	AP_sequence	protectedpure virtual
unbind_from_species()	AP_sequence
unset()=0	AP_sequence	protectedpure virtual
weighted_base_count() const	AP_combinableSeq	inline
~AP_combinableSeq()	AP_combinableSeq	inlinevirtual
~AP_sequence()	AP_sequence	inlinevirtual