NT_validNameParser.h

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// =============================================================== //
//                                                                 //
//   File      : NT_validNameParser.h                              //
//   Purpose   :                                                   //
//                                                                 //
//   Coded by Lothar Richter in November 2002                      //
//   Institute of Microbiology (Technical University Munich)       //
//   http://www.arb-home.de/                                       //
//                                                                 //
// =============================================================== //

#ifndef NT_VALIDNAMEPARSER_H
#define NT_VALIDNAMEPARSER_H

#ifndef ARB_FORWARD_LIST_H
#include <arb_forward_list.h>
#endif
#ifndef __STRING__
#include <string>
#endif
#ifndef __VECTOR__
#include <vector>
#endif

namespace validNames {

    typedef arb_forward_list<std::string> LineSet;
    typedef LineSet*                      LineSetPtr;

    typedef std::vector<std::string>  TokL;
    typedef TokL                     *TokLPtr;

    enum DESCT {
        VALGEN, HETGEN, HOMGEN, RENGEN, CORGEN,
        VALSPEC, HETSPEC, HOMSPEC, RENSPEC, CORSPEC,
        NOTYPE, VAL, HET, HOM, REN, COR
    };

    class Desco {
    private:
        DESCT type;
        bool isCorrected;
        std::string firstgen;
        std::string firstspec;
        std::string firstsub;
        std::string secondgen;
        std::string secondspec;
        std::string secondsub;

    public:
        Desco(DESCT       type_,  bool isCorrected_,
              std::string firstgen_, std::string firstspec_, std::string firstsub_,
              std::string secondgen_, std::string secondspec_, std::string secondsub_) :
            type(type_),
            isCorrected(isCorrected_),
            firstgen(firstgen_),
            firstspec(firstspec_),
            firstsub(firstsub_),
            secondgen(secondgen_),
            secondspec(secondspec_),
            secondsub(secondsub_)
        {}

        std::string getFirstName();
        std::string getSecondName();
        DESCT getType() const { return type; }
    };




    LineSet* readFromFile(const char* infile, LineSet* listOfLines);

    TokLPtr tokenize(const std::string& description, TokLPtr tokenLP);

    Desco determineType(const std::string& descriptionString);

    bool isUpperCase(const std::string& input);
}; // end namespace

#else
#error NT_validNameParser.h included twice
#endif // NT_VALIDNAMEPARSER_H