NJ.cxx File Reference

#include "NJ.hxx"
#include <neighbourjoin.hxx>
#include <TreeNode.h>
#include <arb_diff.h>
#include <arb_progress.h>

Include dependency graph for NJ.cxx:

Go to the source code of this file.

Functions
TreeNode *	neighbourjoining (const char *const *names, const AP_smatrix &smatrix, TreeRoot *troot, bool *aborted_flag)

Function Documentation

TreeNode* neighbourjoining	(	const char *const *	names,
		const AP_smatrix &	smatrix,
		TreeRoot *	troot,
		bool *	aborted_flag
	)

Definition at line 204 of file NJ.cxx.

References arb_progress::aborted(), TreeRoot::change_root(), arb_progress::done(), father, TreeNode::father, PH_NEIGHBOURJOINING::get_dist(), PH_NEIGHBOURJOINING::get_last_ij(), PH_NEIGHBOURJOINING::get_min_ij(), TreeNode::get_tree_root(), arb_progress::inc_by(), PH_NEIGHBOURJOINING::join_nodes(), TreeNode::leftlen, TreeNode::leftson, TreeRoot::makeNode(), TreeNode::markAsLeaf(), TreeNode::name, NULp, TreeNode::rightlen, TreeNode::rightson, symmetric_matrix< T >::size(), sum_of_triangular_numbers(), and triangular_number().

Referenced by di_calculate_tree_cb().