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Macros | |
| #define | ED4_TEMP_AWAR "/tmp/edit4/" |
| #define | ED4_SEARCH_SAVE_BASE ED4_TEMP_AWAR "srchpara" |
| #define | ED4_AWAR_SEQUENCE_INFO_WIDTH "sequence_info/width" |
| #define | ED4_AWAR_TREE_WIDTH "tree/width" |
| #define | ED4_AWAR_COMPRESS_SEQUENCE_TYPE "sequence/compression_type" |
| #define | ED4_AWAR_COMPRESS_SEQUENCE_GAPS "sequence/compression_type_gaps" |
| #define | ED4_AWAR_COMPRESS_SEQUENCE_HIDE "sequence/compression_type_hide" |
| #define | ED4_AWAR_COMPRESS_SEQUENCE_PERCENT "sequence/compression_type_hide_percent" |
| #define | ED4_AWAR_DIGITS_AS_REPEAT "edit/digits_as_repeat" |
| #define | ED4_AWAR_FAST_CURSOR_JUMP "edit/fast_cursor_jump" |
| #define | ED4_AWAR_CURSOR_TYPE "edit/cursor_type" |
| #define | ED4_AWAR_SCROLL_SPEED_X "scrolling/speed_x" |
| #define | ED4_AWAR_SCROLL_SPEED_Y "scrolling/speed_y" |
| #define | ED4_AWAR_SCROLL_MARGIN "scrolling/margin" |
| #define | ED4_AWAR_GAP_CHARS "sequence/gap_chars" |
| #define | ED4_AWAR_ANNOUNCE_CHECKSUM_CHANGES "sequence/announce_checksum_changes" |
| #define | ED4_AWAR_GROUP_INDENT "group/indent" |
| #define | ED4_AWAR_GROUP_COLOR "group/color" |
| #define | ED4_AWAR_CONSENSUS_COUNTGAPS "con/countgaps" |
| #define | ED4_AWAR_CONSENSUS_GAPBOUND "con/gapbound" |
| #define | ED4_AWAR_CONSENSUS_GROUP "con/group" |
| #define | ED4_AWAR_CONSENSUS_CONSIDBOUND "con/considbound" |
| #define | ED4_AWAR_CONSENSUS_UPPER "con/upper" |
| #define | ED4_AWAR_CONSENSUS_LOWER "con/lower" |
| #define | ED4_AWAR_CONSENSUS_SHOW "con/show" |
| #define | ED4_AWAR_CREATE_FROM_CONS_REPL_EQUAL "concreate/repl_equal" |
| #define | ED4_AWAR_CREATE_FROM_CONS_REPL_POINT "concreate/repl_point" |
| #define | ED4_AWAR_CREATE_FROM_CONS_CREATE_POINTS "concreate/create_points" |
| #define | ED4_AWAR_CREATE_FROM_CONS_ALL_UPPER "concreate/all_upper" |
| #define | ED4_AWAR_CREATE_FROM_CONS_DATA_SOURCE "concreate/data_source" |
| #define | ED4_AWAR_REP_SEARCH_PATTERN "replace/spat" |
| #define | ED4_AWAR_REP_REPLACE_PATTERN "replace/rpat" |
| #define | ED4_AWAR_NDS_SELECT "nds/select" |
| #define | ED4_AWAR_NDS_SELECT_TEMPLATE "nds/pat_%i/select" |
| #define | ED4_AWAR_NDS_DESCRIPTION_TEMPLATE "nds/pat_%i/description" |
| #define | ED4_AWAR_NDS_ACI_TEMPLATE "nds/pat_%i/aci" |
| #define | ED4_AWAR_NDS_WIDTH_TEMPLATE "nds/pat_%i/width" |
| #define | ED4_AWAR_NDS_INFO_WIDTH "nds/infowidth" |
| #define | ED4_AWAR_NDS_ECOLI_NAME "nds/ecoliname" |
| #define | ED4_AWAR_USER1_SEARCH_PATTERN "search/user1/pattern" |
| #define | ED4_AWAR_USER1_SEARCH_MIN_MISMATCHES "search/user1/min_mismatches" |
| #define | ED4_AWAR_USER1_SEARCH_MAX_MISMATCHES "search/user1/max_mismatches" |
| #define | ED4_AWAR_USER1_SEARCH_CASE "search/user1/case" |
| #define | ED4_AWAR_USER1_SEARCH_TU "search/user1/tu" |
| #define | ED4_AWAR_USER1_SEARCH_PAT_GAPS "search/user1/pat_gaps" |
| #define | ED4_AWAR_USER1_SEARCH_SEQ_GAPS "search/user1/seq_gaps" |
| #define | ED4_AWAR_USER1_SEARCH_SHOW "search/user1/show" |
| #define | ED4_AWAR_USER1_SEARCH_OPEN_FOLDED "search/user1/open_folded" |
| #define | ED4_AWAR_USER1_SEARCH_AUTO_JUMP "search/user1/autoJump" |
| #define | ED4_AWAR_USER1_SEARCH_REVERSE "search/user1/reverse" |
| #define | ED4_AWAR_USER1_SEARCH_COMPLEMENT "search/user1/complement" |
| #define | ED4_AWAR_USER1_SEARCH_EXACT "search/user1/exact" |
| #define | ED4_AWAR_USER2_SEARCH_PATTERN "search/user2/pattern" |
| #define | ED4_AWAR_USER2_SEARCH_MIN_MISMATCHES "search/user2/min_mismatches" |
| #define | ED4_AWAR_USER2_SEARCH_MAX_MISMATCHES "search/user2/max_mismatches" |
| #define | ED4_AWAR_USER2_SEARCH_CASE "search/user2/case" |
| #define | ED4_AWAR_USER2_SEARCH_TU "search/user2/tu" |
| #define | ED4_AWAR_USER2_SEARCH_PAT_GAPS "search/user2/pat_gaps" |
| #define | ED4_AWAR_USER2_SEARCH_SEQ_GAPS "search/user2/seq_gaps" |
| #define | ED4_AWAR_USER2_SEARCH_SHOW "search/user2/show" |
| #define | ED4_AWAR_USER2_SEARCH_OPEN_FOLDED "search/user2/open_folded" |
| #define | ED4_AWAR_USER2_SEARCH_AUTO_JUMP "search/user2/autoJump" |
| #define | ED4_AWAR_USER2_SEARCH_REVERSE "search/user2/reverse" |
| #define | ED4_AWAR_USER2_SEARCH_COMPLEMENT "search/user2/complement" |
| #define | ED4_AWAR_USER2_SEARCH_EXACT "search/user2/exact" |
| #define | ED4_AWAR_PROBE_SEARCH_PATTERN AWAR_TARGET_STRING |
| #define | ED4_AWAR_PROBE_SEARCH_MIN_MISMATCHES "search/probe/min_mismatches" |
| #define | ED4_AWAR_PROBE_SEARCH_MAX_MISMATCHES AWAR_MAX_MISMATCHES |
| #define | ED4_AWAR_PROBE_SEARCH_CASE "search/probe/case" |
| #define | ED4_AWAR_PROBE_SEARCH_TU "search/probe/tu" |
| #define | ED4_AWAR_PROBE_SEARCH_PAT_GAPS "search/probe/pat_gaps" |
| #define | ED4_AWAR_PROBE_SEARCH_SEQ_GAPS "search/probe/seq_gaps" |
| #define | ED4_AWAR_PROBE_SEARCH_SHOW "search/probe/show" |
| #define | ED4_AWAR_PROBE_SEARCH_OPEN_FOLDED "search/probe/open_folded" |
| #define | ED4_AWAR_PROBE_SEARCH_AUTO_JUMP "search/probe/autoJump" |
| #define | ED4_AWAR_PROBE_SEARCH_REVERSE "search/probe/reverse" |
| #define | ED4_AWAR_PROBE_SEARCH_COMPLEMENT "search/probe/complement" |
| #define | ED4_AWAR_PROBE_SEARCH_EXACT "search/probe/exact" |
| #define | ED4_AWAR_PRIMER1_SEARCH_PATTERN AWAR_PRIMER_TARGET_STRING |
| #define | ED4_AWAR_PRIMER1_SEARCH_MIN_MISMATCHES "search/primer1/min_mismatches" |
| #define | ED4_AWAR_PRIMER1_SEARCH_MAX_MISMATCHES "search/primer1/max_mismatches" |
| #define | ED4_AWAR_PRIMER1_SEARCH_CASE "search/primer1/case" |
| #define | ED4_AWAR_PRIMER1_SEARCH_TU "search/primer1/tu" |
| #define | ED4_AWAR_PRIMER1_SEARCH_PAT_GAPS "search/primer1/pat_gaps" |
| #define | ED4_AWAR_PRIMER1_SEARCH_SEQ_GAPS "search/primer1/seq_gaps" |
| #define | ED4_AWAR_PRIMER1_SEARCH_SHOW "search/primer1/show" |
| #define | ED4_AWAR_PRIMER1_SEARCH_OPEN_FOLDED "search/primer1/open_folded" |
| #define | ED4_AWAR_PRIMER1_SEARCH_AUTO_JUMP "search/primer1/autoJump" |
| #define | ED4_AWAR_PRIMER1_SEARCH_REVERSE "search/primer1/reverse" |
| #define | ED4_AWAR_PRIMER1_SEARCH_COMPLEMENT "search/primer1/complement" |
| #define | ED4_AWAR_PRIMER1_SEARCH_EXACT "search/primer1/exact" |
| #define | ED4_AWAR_PRIMER2_SEARCH_PATTERN "search/primer2/pattern" |
| #define | ED4_AWAR_PRIMER2_SEARCH_MIN_MISMATCHES "search/primer2/min_mismatches" |
| #define | ED4_AWAR_PRIMER2_SEARCH_MAX_MISMATCHES "search/primer2/max_mismatches" |
| #define | ED4_AWAR_PRIMER2_SEARCH_CASE "search/primer2/case" |
| #define | ED4_AWAR_PRIMER2_SEARCH_TU "search/primer2/tu" |
| #define | ED4_AWAR_PRIMER2_SEARCH_PAT_GAPS "search/primer2/pat_gaps" |
| #define | ED4_AWAR_PRIMER2_SEARCH_SEQ_GAPS "search/primer2/seq_gaps" |
| #define | ED4_AWAR_PRIMER2_SEARCH_SHOW "search/primer2/show" |
| #define | ED4_AWAR_PRIMER2_SEARCH_OPEN_FOLDED "search/primer2/open_folded" |
| #define | ED4_AWAR_PRIMER2_SEARCH_AUTO_JUMP "search/primer2/autoJump" |
| #define | ED4_AWAR_PRIMER2_SEARCH_REVERSE "search/primer2/reverse" |
| #define | ED4_AWAR_PRIMER2_SEARCH_COMPLEMENT "search/primer2/complement" |
| #define | ED4_AWAR_PRIMER2_SEARCH_EXACT "search/primer2/exact" |
| #define | ED4_AWAR_PRIMER3_SEARCH_PATTERN "search/primer3/pattern" |
| #define | ED4_AWAR_PRIMER3_SEARCH_MIN_MISMATCHES "search/primer3/min_mismatches" |
| #define | ED4_AWAR_PRIMER3_SEARCH_MAX_MISMATCHES "search/primer3/max_mismatches" |
| #define | ED4_AWAR_PRIMER3_SEARCH_CASE "search/primer3/case" |
| #define | ED4_AWAR_PRIMER3_SEARCH_TU "search/primer3/tu" |
| #define | ED4_AWAR_PRIMER3_SEARCH_PAT_GAPS "search/primer3/pat_gaps" |
| #define | ED4_AWAR_PRIMER3_SEARCH_SEQ_GAPS "search/primer3/seq_gaps" |
| #define | ED4_AWAR_PRIMER3_SEARCH_SHOW "search/primer3/show" |
| #define | ED4_AWAR_PRIMER3_SEARCH_OPEN_FOLDED "search/primer3/open_folded" |
| #define | ED4_AWAR_PRIMER3_SEARCH_AUTO_JUMP "search/primer3/autoJump" |
| #define | ED4_AWAR_PRIMER3_SEARCH_REVERSE "search/primer3/reverse" |
| #define | ED4_AWAR_PRIMER3_SEARCH_COMPLEMENT "search/primer3/complement" |
| #define | ED4_AWAR_PRIMER3_SEARCH_EXACT "search/primer3/exact" |
| #define | ED4_AWAR_SIG1_SEARCH_PATTERN AWAR_GENE_CONTENT |
| #define | ED4_AWAR_SIG1_SEARCH_MIN_MISMATCHES "search/sig1/min_mismatches" |
| #define | ED4_AWAR_SIG1_SEARCH_MAX_MISMATCHES "search/sig1/max_mismatches" |
| #define | ED4_AWAR_SIG1_SEARCH_CASE "search/sig1/case" |
| #define | ED4_AWAR_SIG1_SEARCH_TU "search/sig1/tu" |
| #define | ED4_AWAR_SIG1_SEARCH_PAT_GAPS "search/sig1/pat_gaps" |
| #define | ED4_AWAR_SIG1_SEARCH_SEQ_GAPS "search/sig1/seq_gaps" |
| #define | ED4_AWAR_SIG1_SEARCH_SHOW "search/sig1/show" |
| #define | ED4_AWAR_SIG1_SEARCH_OPEN_FOLDED "search/sig1/open_folded" |
| #define | ED4_AWAR_SIG1_SEARCH_AUTO_JUMP "search/sig1/autoJump" |
| #define | ED4_AWAR_SIG1_SEARCH_REVERSE "search/sig1/reverse" |
| #define | ED4_AWAR_SIG1_SEARCH_COMPLEMENT "search/sig1/complement" |
| #define | ED4_AWAR_SIG1_SEARCH_EXACT "search/sig1/exact" |
| #define | ED4_AWAR_SIG2_SEARCH_PATTERN "search/sig2/pattern" |
| #define | ED4_AWAR_SIG2_SEARCH_MIN_MISMATCHES "search/sig2/min_mismatches" |
| #define | ED4_AWAR_SIG2_SEARCH_MAX_MISMATCHES "search/sig2/max_mismatches" |
| #define | ED4_AWAR_SIG2_SEARCH_CASE "search/sig2/case" |
| #define | ED4_AWAR_SIG2_SEARCH_TU "search/sig2/tu" |
| #define | ED4_AWAR_SIG2_SEARCH_PAT_GAPS "search/sig2/pat_gaps" |
| #define | ED4_AWAR_SIG2_SEARCH_SEQ_GAPS "search/sig2/seq_gaps" |
| #define | ED4_AWAR_SIG2_SEARCH_SHOW "search/sig2/show" |
| #define | ED4_AWAR_SIG2_SEARCH_OPEN_FOLDED "search/sig2/open_folded" |
| #define | ED4_AWAR_SIG2_SEARCH_AUTO_JUMP "search/sig2/autoJump" |
| #define | ED4_AWAR_SIG2_SEARCH_REVERSE "search/sig2/reverse" |
| #define | ED4_AWAR_SIG2_SEARCH_COMPLEMENT "search/sig2/complement" |
| #define | ED4_AWAR_SIG2_SEARCH_EXACT "search/sig2/exact" |
| #define | ED4_AWAR_SIG3_SEARCH_PATTERN "search/sig3/pattern" |
| #define | ED4_AWAR_SIG3_SEARCH_MIN_MISMATCHES "search/sig3/min_mismatches" |
| #define | ED4_AWAR_SIG3_SEARCH_MAX_MISMATCHES "search/sig3/max_mismatches" |
| #define | ED4_AWAR_SIG3_SEARCH_CASE "search/sig3/case" |
| #define | ED4_AWAR_SIG3_SEARCH_TU "search/sig3/tu" |
| #define | ED4_AWAR_SIG3_SEARCH_PAT_GAPS "search/sig3/pat_gaps" |
| #define | ED4_AWAR_SIG3_SEARCH_SEQ_GAPS "search/sig3/seq_gaps" |
| #define | ED4_AWAR_SIG3_SEARCH_SHOW "search/sig3/show" |
| #define | ED4_AWAR_SIG3_SEARCH_OPEN_FOLDED "search/sig3/open_folded" |
| #define | ED4_AWAR_SIG3_SEARCH_AUTO_JUMP "search/sig3/autoJump" |
| #define | ED4_AWAR_SIG3_SEARCH_REVERSE "search/sig3/reverse" |
| #define | ED4_AWAR_SIG3_SEARCH_COMPLEMENT "search/sig3/complement" |
| #define | ED4_AWAR_SIG3_SEARCH_EXACT "search/sig3/exact" |
| #define | ED4_AWAR_SPECIES_TO_CREATE ED4_TEMP_AWAR "species_to_create" |
Macro Definition Documentation
| #define ED4_TEMP_AWAR "/tmp/edit4/" |
Definition at line 14 of file ed4_awars.hxx.
| #define ED4_SEARCH_SAVE_BASE ED4_TEMP_AWAR "srchpara" |
Definition at line 15 of file ed4_awars.hxx.
Referenced by ED4_create_search_awars(), load_search_paras_from_file(), loadsave_search_parameters(), and save_search_paras_to_file().
| #define ED4_AWAR_SEQUENCE_INFO_WIDTH "sequence_info/width" |
Definition at line 19 of file ed4_awars.hxx.
| #define ED4_AWAR_TREE_WIDTH "tree/width" |
Definition at line 20 of file ed4_awars.hxx.
| #define ED4_AWAR_COMPRESS_SEQUENCE_TYPE "sequence/compression_type" |
Definition at line 22 of file ed4_awars.hxx.
Referenced by ED4_compression_changed_cb(), ED4_compression_toggle_changed_cb(), ed4_create_all_awars(), ED4_root_group_manager::ED4_root_group_manager(), and ED4_Edit_String::edit().
| #define ED4_AWAR_COMPRESS_SEQUENCE_GAPS "sequence/compression_type_gaps" |
Definition at line 23 of file ed4_awars.hxx.
Referenced by ED4_compression_toggle_changed_cb(), ed4_create_all_awars(), and ED4_create_editor_options_window().
| #define ED4_AWAR_COMPRESS_SEQUENCE_HIDE "sequence/compression_type_hide" |
Definition at line 24 of file ed4_awars.hxx.
Referenced by ED4_compression_toggle_changed_cb(), ed4_create_all_awars(), and ED4_create_editor_options_window().
| #define ED4_AWAR_COMPRESS_SEQUENCE_PERCENT "sequence/compression_type_hide_percent" |
Definition at line 25 of file ed4_awars.hxx.
Referenced by ED4_compression_changed_cb(), ed4_create_all_awars(), ED4_create_editor_options_window(), and ED4_root_group_manager::ED4_root_group_manager().
| #define ED4_AWAR_DIGITS_AS_REPEAT "edit/digits_as_repeat" |
Definition at line 27 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), ED4_Edit_String::edit(), and ED4_root::generate_window().
| #define ED4_AWAR_FAST_CURSOR_JUMP "edit/fast_cursor_jump" |
Definition at line 28 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), and ED4_cursor::move_cursor().
| #define ED4_AWAR_CURSOR_TYPE "edit/cursor_type" |
Definition at line 29 of file ed4_awars.hxx.
Referenced by ED4_cursor::changeType(), ed4_create_all_awars(), and ED4_cursor::ED4_cursor().
| #define ED4_AWAR_SCROLL_SPEED_X "scrolling/speed_x" |
Definition at line 31 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), and ed4_scroll().
| #define ED4_AWAR_SCROLL_SPEED_Y "scrolling/speed_y" |
Definition at line 32 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), and ed4_scroll().
| #define ED4_AWAR_SCROLL_MARGIN "scrolling/margin" |
Definition at line 33 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), and ED4_cursor::jump_screen_pos().
| #define ED4_AWAR_GAP_CHARS "sequence/gap_chars" |
Definition at line 35 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), ED4_gap_chars_changed(), ED4_pfold_calculate_secstruct_match(), ED4_pfold_extend_nucleation_sites(), ED4_pfold_find_nucleation_sites(), ED4_pfold_find_turns(), and ED4_pfold_resolve_overlaps().
| #define ED4_AWAR_ANNOUNCE_CHECKSUM_CHANGES "sequence/announce_checksum_changes" |
Definition at line 36 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_editor_options_window(), and ED4_terminal::write_sequence().
| #define ED4_AWAR_GROUP_INDENT "group/indent" |
Definition at line 40 of file ed4_awars.hxx.
| #define ED4_AWAR_GROUP_COLOR "group/color" |
Definition at line 41 of file ed4_awars.hxx.
| #define ED4_AWAR_CONSENSUS_COUNTGAPS "con/countgaps" |
Definition at line 45 of file ed4_awars.hxx.
Referenced by ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_GAPBOUND "con/gapbound" |
Definition at line 46 of file ed4_awars.hxx.
Referenced by ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_GROUP "con/group" |
Definition at line 47 of file ed4_awars.hxx.
Referenced by ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_CONSIDBOUND "con/considbound" |
Definition at line 48 of file ed4_awars.hxx.
Referenced by ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_UPPER "con/upper" |
Definition at line 49 of file ed4_awars.hxx.
Referenced by consensus_upper_lower_changed_cb(), ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_LOWER "con/lower" |
Definition at line 50 of file ed4_awars.hxx.
Referenced by consensus_upper_lower_changed_cb(), ED4_create_consensus_awars(), and ED4_create_consensus_definition_window().
| #define ED4_AWAR_CONSENSUS_SHOW "con/show" |
Definition at line 51 of file ed4_awars.hxx.
Referenced by ED4_consensus_display_changed(), ED4_create_consensus_awars(), ED4_create_consensus_definition_window(), ED4_group_manager::fold(), and ED4_root::generate_window().
| #define ED4_AWAR_CREATE_FROM_CONS_REPL_EQUAL "concreate/repl_equal" |
Definition at line 55 of file ed4_awars.hxx.
Referenced by createDataFromConsensus(), ed4_create_all_awars(), and ED4_create_new_seq_window().
| #define ED4_AWAR_CREATE_FROM_CONS_REPL_POINT "concreate/repl_point" |
Definition at line 56 of file ed4_awars.hxx.
Referenced by createDataFromConsensus(), ed4_create_all_awars(), and ED4_create_new_seq_window().
| #define ED4_AWAR_CREATE_FROM_CONS_CREATE_POINTS "concreate/create_points" |
Definition at line 57 of file ed4_awars.hxx.
Referenced by createDataFromConsensus(), ed4_create_all_awars(), and ED4_create_new_seq_window().
| #define ED4_AWAR_CREATE_FROM_CONS_ALL_UPPER "concreate/all_upper" |
Definition at line 58 of file ed4_awars.hxx.
Referenced by createDataFromConsensus(), ed4_create_all_awars(), and ED4_create_new_seq_window().
| #define ED4_AWAR_CREATE_FROM_CONS_DATA_SOURCE "concreate/data_source" |
Definition at line 59 of file ed4_awars.hxx.
Referenced by create_new_species(), ed4_create_all_awars(), and ED4_create_new_seq_window().
| #define ED4_AWAR_REP_SEARCH_PATTERN "replace/spat" |
Definition at line 63 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_replace_window(), and replace_in_block().
| #define ED4_AWAR_REP_REPLACE_PATTERN "replace/rpat" |
Definition at line 64 of file ed4_awars.hxx.
Referenced by ed4_create_all_awars(), ED4_create_replace_window(), and replace_in_block().
| #define ED4_AWAR_NDS_SELECT "nds/select" |
Definition at line 68 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), ed4_nds_select_change(), and NDS_changed().
| #define ED4_AWAR_NDS_SELECT_TEMPLATE "nds/pat_%i/select" |
Definition at line 69 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), ED4_create_nds_window(), and ed4_nds_select_change().
| #define ED4_AWAR_NDS_DESCRIPTION_TEMPLATE "nds/pat_%i/description" |
Definition at line 70 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), and ED4_create_nds_window().
| #define ED4_AWAR_NDS_ACI_TEMPLATE "nds/pat_%i/aci" |
Definition at line 71 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), ED4_create_nds_window(), and NDS_changed().
| #define ED4_AWAR_NDS_WIDTH_TEMPLATE "nds/pat_%i/width" |
Definition at line 72 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), ED4_create_nds_window(), and NDS_changed().
| #define ED4_AWAR_NDS_INFO_WIDTH "nds/infowidth" |
Definition at line 73 of file ed4_awars.hxx.
Referenced by ED4_calc_terminal_extentions(), ED4_create_NDS_awars(), and ED4_create_nds_window().
| #define ED4_AWAR_NDS_ECOLI_NAME "nds/ecoliname" |
Definition at line 74 of file ed4_awars.hxx.
Referenced by ED4_create_NDS_awars(), ED4_create_nds_window(), and ED4_root::generate_window().
| #define ED4_AWAR_USER1_SEARCH_PATTERN "search/user1/pattern" |
Definition at line 78 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_MIN_MISMATCHES "search/user1/min_mismatches" |
Definition at line 79 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_MAX_MISMATCHES "search/user1/max_mismatches" |
Definition at line 80 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_CASE "search/user1/case" |
Definition at line 81 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_TU "search/user1/tu" |
Definition at line 82 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_PAT_GAPS "search/user1/pat_gaps" |
Definition at line 83 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_SEQ_GAPS "search/user1/seq_gaps" |
Definition at line 84 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_SHOW "search/user1/show" |
Definition at line 85 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_OPEN_FOLDED "search/user1/open_folded" |
Definition at line 86 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_AUTO_JUMP "search/user1/autoJump" |
Definition at line 87 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_REVERSE "search/user1/reverse" |
Definition at line 88 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_COMPLEMENT "search/user1/complement" |
Definition at line 89 of file ed4_awars.hxx.
| #define ED4_AWAR_USER1_SEARCH_EXACT "search/user1/exact" |
Definition at line 90 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_PATTERN "search/user2/pattern" |
Definition at line 92 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_MIN_MISMATCHES "search/user2/min_mismatches" |
Definition at line 93 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_MAX_MISMATCHES "search/user2/max_mismatches" |
Definition at line 94 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_CASE "search/user2/case" |
Definition at line 95 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_TU "search/user2/tu" |
Definition at line 96 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_PAT_GAPS "search/user2/pat_gaps" |
Definition at line 97 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_SEQ_GAPS "search/user2/seq_gaps" |
Definition at line 98 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_SHOW "search/user2/show" |
Definition at line 99 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_OPEN_FOLDED "search/user2/open_folded" |
Definition at line 100 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_AUTO_JUMP "search/user2/autoJump" |
Definition at line 101 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_REVERSE "search/user2/reverse" |
Definition at line 102 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_COMPLEMENT "search/user2/complement" |
Definition at line 103 of file ed4_awars.hxx.
| #define ED4_AWAR_USER2_SEARCH_EXACT "search/user2/exact" |
Definition at line 104 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_PATTERN AWAR_TARGET_STRING |
Definition at line 106 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_MIN_MISMATCHES "search/probe/min_mismatches" |
Definition at line 107 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_MAX_MISMATCHES AWAR_MAX_MISMATCHES |
Definition at line 108 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_CASE "search/probe/case" |
Definition at line 109 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_TU "search/probe/tu" |
Definition at line 110 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_PAT_GAPS "search/probe/pat_gaps" |
Definition at line 111 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_SEQ_GAPS "search/probe/seq_gaps" |
Definition at line 112 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_SHOW "search/probe/show" |
Definition at line 113 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_OPEN_FOLDED "search/probe/open_folded" |
Definition at line 114 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_AUTO_JUMP "search/probe/autoJump" |
Definition at line 115 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_REVERSE "search/probe/reverse" |
Definition at line 116 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_COMPLEMENT "search/probe/complement" |
Definition at line 117 of file ed4_awars.hxx.
| #define ED4_AWAR_PROBE_SEARCH_EXACT "search/probe/exact" |
Definition at line 118 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_PATTERN AWAR_PRIMER_TARGET_STRING |
Definition at line 120 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_MIN_MISMATCHES "search/primer1/min_mismatches" |
Definition at line 121 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_MAX_MISMATCHES "search/primer1/max_mismatches" |
Definition at line 122 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_CASE "search/primer1/case" |
Definition at line 123 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_TU "search/primer1/tu" |
Definition at line 124 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_PAT_GAPS "search/primer1/pat_gaps" |
Definition at line 125 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_SEQ_GAPS "search/primer1/seq_gaps" |
Definition at line 126 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_SHOW "search/primer1/show" |
Definition at line 127 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_OPEN_FOLDED "search/primer1/open_folded" |
Definition at line 128 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_AUTO_JUMP "search/primer1/autoJump" |
Definition at line 129 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_REVERSE "search/primer1/reverse" |
Definition at line 130 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_COMPLEMENT "search/primer1/complement" |
Definition at line 131 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER1_SEARCH_EXACT "search/primer1/exact" |
Definition at line 132 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_PATTERN "search/primer2/pattern" |
Definition at line 134 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_MIN_MISMATCHES "search/primer2/min_mismatches" |
Definition at line 135 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_MAX_MISMATCHES "search/primer2/max_mismatches" |
Definition at line 136 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_CASE "search/primer2/case" |
Definition at line 137 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_TU "search/primer2/tu" |
Definition at line 138 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_PAT_GAPS "search/primer2/pat_gaps" |
Definition at line 139 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_SEQ_GAPS "search/primer2/seq_gaps" |
Definition at line 140 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_SHOW "search/primer2/show" |
Definition at line 141 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_OPEN_FOLDED "search/primer2/open_folded" |
Definition at line 142 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_AUTO_JUMP "search/primer2/autoJump" |
Definition at line 143 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_REVERSE "search/primer2/reverse" |
Definition at line 144 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_COMPLEMENT "search/primer2/complement" |
Definition at line 145 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER2_SEARCH_EXACT "search/primer2/exact" |
Definition at line 146 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_PATTERN "search/primer3/pattern" |
Definition at line 148 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_MIN_MISMATCHES "search/primer3/min_mismatches" |
Definition at line 149 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_MAX_MISMATCHES "search/primer3/max_mismatches" |
Definition at line 150 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_CASE "search/primer3/case" |
Definition at line 151 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_TU "search/primer3/tu" |
Definition at line 152 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_PAT_GAPS "search/primer3/pat_gaps" |
Definition at line 153 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_SEQ_GAPS "search/primer3/seq_gaps" |
Definition at line 154 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_SHOW "search/primer3/show" |
Definition at line 155 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_OPEN_FOLDED "search/primer3/open_folded" |
Definition at line 156 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_AUTO_JUMP "search/primer3/autoJump" |
Definition at line 157 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_REVERSE "search/primer3/reverse" |
Definition at line 158 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_COMPLEMENT "search/primer3/complement" |
Definition at line 159 of file ed4_awars.hxx.
| #define ED4_AWAR_PRIMER3_SEARCH_EXACT "search/primer3/exact" |
Definition at line 160 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_PATTERN AWAR_GENE_CONTENT |
Definition at line 162 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_MIN_MISMATCHES "search/sig1/min_mismatches" |
Definition at line 163 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_MAX_MISMATCHES "search/sig1/max_mismatches" |
Definition at line 164 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_CASE "search/sig1/case" |
Definition at line 165 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_TU "search/sig1/tu" |
Definition at line 166 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_PAT_GAPS "search/sig1/pat_gaps" |
Definition at line 167 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_SEQ_GAPS "search/sig1/seq_gaps" |
Definition at line 168 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_SHOW "search/sig1/show" |
Definition at line 169 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_OPEN_FOLDED "search/sig1/open_folded" |
Definition at line 170 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_AUTO_JUMP "search/sig1/autoJump" |
Definition at line 171 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_REVERSE "search/sig1/reverse" |
Definition at line 172 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_COMPLEMENT "search/sig1/complement" |
Definition at line 173 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG1_SEARCH_EXACT "search/sig1/exact" |
Definition at line 174 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_PATTERN "search/sig2/pattern" |
Definition at line 176 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_MIN_MISMATCHES "search/sig2/min_mismatches" |
Definition at line 177 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_MAX_MISMATCHES "search/sig2/max_mismatches" |
Definition at line 178 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_CASE "search/sig2/case" |
Definition at line 179 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_TU "search/sig2/tu" |
Definition at line 180 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_PAT_GAPS "search/sig2/pat_gaps" |
Definition at line 181 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_SEQ_GAPS "search/sig2/seq_gaps" |
Definition at line 182 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_SHOW "search/sig2/show" |
Definition at line 183 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_OPEN_FOLDED "search/sig2/open_folded" |
Definition at line 184 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_AUTO_JUMP "search/sig2/autoJump" |
Definition at line 185 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_REVERSE "search/sig2/reverse" |
Definition at line 186 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_COMPLEMENT "search/sig2/complement" |
Definition at line 187 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG2_SEARCH_EXACT "search/sig2/exact" |
Definition at line 188 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_PATTERN "search/sig3/pattern" |
Definition at line 190 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_MIN_MISMATCHES "search/sig3/min_mismatches" |
Definition at line 191 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_MAX_MISMATCHES "search/sig3/max_mismatches" |
Definition at line 192 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_CASE "search/sig3/case" |
Definition at line 193 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_TU "search/sig3/tu" |
Definition at line 194 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_PAT_GAPS "search/sig3/pat_gaps" |
Definition at line 195 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_SEQ_GAPS "search/sig3/seq_gaps" |
Definition at line 196 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_SHOW "search/sig3/show" |
Definition at line 197 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_OPEN_FOLDED "search/sig3/open_folded" |
Definition at line 198 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_AUTO_JUMP "search/sig3/autoJump" |
Definition at line 199 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_REVERSE "search/sig3/reverse" |
Definition at line 200 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_COMPLEMENT "search/sig3/complement" |
Definition at line 201 of file ed4_awars.hxx.
| #define ED4_AWAR_SIG3_SEARCH_EXACT "search/sig3/exact" |
Definition at line 202 of file ed4_awars.hxx.
| #define ED4_AWAR_SPECIES_TO_CREATE ED4_TEMP_AWAR "species_to_create" |
Definition at line 206 of file ed4_awars.hxx.
Referenced by create_new_species(), ed4_create_all_awars(), and ED4_create_new_seq_window().
