#include <arbdbt.h>
#include <arb_global_defs.h>
#include "gb_local.h"

Include dependency graph for adChangeKey.cxx:

Functions
GBDATA *	GBT_get_changekey (GBDATA gb_main, const char key, const char *change_key_path)

GB_TYPES	GBT_get_type_of_changekey (GBDATA gb_main, const char field_name, const char *change_key_path)

static GB_ERROR	gbt_set_type_of_changekey (GBDATA gb_main, const char field_name, GB_TYPES type, const char *change_key_path)

GBDATA *	GBT_searchOrCreate_itemfield_according_to_changekey (GBDATA gb_item, const char field_name, const char *change_key_path)

GB_ERROR	GBT_add_new_changekey_to_keypath (GBDATA gb_main, const char name, GB_TYPES type, const char *keypath)

GB_ERROR	GBT_add_new_species_changekey (GBDATA gb_main, const char name, GB_TYPES type)

GB_ERROR	GBT_add_new_gene_changekey (GBDATA gb_main, const char name, GB_TYPES type)

GB_ERROR	GBT_add_new_experiment_changekey (GBDATA gb_main, const char name, GB_TYPES type)

GB_ERROR	GBT_add_new_changekey (GBDATA gb_main, const char name, int type)

GB_ERROR	GBT_add_alignment_changekeys (GBDATA gb_main, const char ali)

static GB_ERROR	write_int_converted (GBDATA gbfield, const char data, bool trimmed, size_t *rounded)

static GB_ERROR	write_float_converted (GBDATA gbfield, const char data, bool trimmed)

GB_ERROR	GBT_write_int_converted (GBDATA gb_int_writable, const char data, size_t *rounded)

GB_ERROR	GBT_write_float_converted (GBDATA gb_float_writable, const char data)

GB_ERROR	GBT_convert_changekey (GBDATA gb_main, const char name, GB_TYPES target_type)

Function Documentation

GBDATA* GBT_get_changekey	(	GBDATA *	gb_main,
		const char *	key,
		const char *	change_key_path
	)

Definition at line 16 of file adChangeKey.cxx.

References CHANGEKEY_NAME, GB_CREATE_CONTAINER, GB_find_string(), GB_get_father(), GB_IGNORE_CASE, GB_search(), NULp, and SEARCH_GRANDCHILD.

Referenced by field_delete_cb(), GBT_add_new_changekey_to_keypath(), GBT_convert_changekey(), GBT_get_type_of_changekey(), gbt_set_type_of_changekey(), RegFieldSelection::get_keytype(), hide_field_cb(), reorder_keys(), and reorder_up_down().

GB_TYPES GBT_get_type_of_changekey	(	GBDATA *	gb_main,
		const char *	field_name,
		const char *	change_key_path
	)

Definition at line 33 of file adChangeKey.cxx.

References CHANGEKEY_TYPE, GB_NONE, GBT_get_changekey(), GBT_read_int(), and type.

Referenced by awt_string_handler::awar_changed(), awtc_nn_search_all_listed(), field_convert_update_typesel_cb(), GBT_searchOrCreate_itemfield_according_to_changekey(), hits_sort_params::hits_sort_params(), modify_fields_of_queried_cb(), and SpeciesFlag::prepare_itemfield().

static GB_ERROR gbt_set_type_of_changekey	(	GBDATA *	gb_main,
		const char *	field_name,
		GB_TYPES	type,
		const char *	change_key_path
	)

static

Definition at line 48 of file adChangeKey.cxx.

References CHANGEKEY_TYPE, error(), GBS_global_string(), GBT_get_changekey(), GBT_write_int(), and NULp.

Referenced by GBT_convert_changekey().

GBDATA* GBT_searchOrCreate_itemfield_according_to_changekey	(	GBDATA *	gb_item,
		const char *	field_name,
		const char *	change_key_path
	)

search or create an item entry. If the entry exists, the result is identical to GB_search(gb_item, field_name, GB_FIND). If the entry does not exist, an entry with the type stored in the changekey-table will be created.

Returns: created itemfield or NULp in case of error (which is exported in that case)

Definition at line 61 of file adChangeKey.cxx.

References gb_assert, GB_clear_error(), GB_export_errorf(), GB_FIND, GB_get_root(), GB_have_error(), GB_NONE, GB_search(), GBT_get_type_of_changekey(), and type.

Referenced by calc_and_update_alignment_errors_cb(), mark_action(), mergeSimilarSpecies(), set_field_of_queried_cb(), and st_ml_add_quality_string_to_species().

GB_ERROR GBT_add_new_changekey_to_keypath	(	GBDATA *	gb_main,
		const char *	name,
		GB_TYPES	type,
		const char *	keypath
	)

Add a new or check an existing changekey for items using 'keypath'

Parameters

gb_main	database
name	name of changekey. may be hierarchical (e.g. 'ali_16s/data')
type	field type of the key (yields error on mismatch!)
keypath	location in database where changekeys are stored.

Returns: error

Definition at line 86 of file adChangeKey.cxx.

References ARB_strdup(), CHANGEKEY, CHANGEKEY_NAME, CHANGEKEY_TYPE, error(), gb_assert, GB_await_error(), GB_CREATE_CONTAINER, GB_create_container(), GB_DB, GB_first_non_key_char(), GB_search(), GBS_global_string(), GBT_get_changekey(), GBT_read_int(), GBT_write_int(), GBT_write_string(), and NULp.

Referenced by awt_string_handler::awar_changed(), field_create_cb(), GBT_add_new_experiment_changekey(), GBT_add_new_gene_changekey(), GBT_add_new_species_changekey(), prepare_and_get_selected_itemfield(), and SpeciesFlag::prepare_itemfield().

GB_ERROR GBT_add_new_species_changekey	(	GBDATA *	gb_main,
		const char *	name,
		GB_TYPES	type
	)

Definition at line 133 of file adChangeKey.cxx.

References CHANGE_KEY_PATH, and GBT_add_new_changekey_to_keypath().

Referenced by GBT_add_alignment_changekeys(), GBT_add_new_changekey(), MG_transfer_fields_info(), nt_add_partial(), species_field_selection_list_rescan(), and SQ_add_changekeys().

GB_ERROR GBT_add_new_gene_changekey	(	GBDATA *	gb_main,
		const char *	name,
		GB_TYPES	type
	)

Definition at line 137 of file adChangeKey.cxx.

References CHANGE_KEY_PATH_GENES, and GBT_add_new_changekey_to_keypath().

Referenced by gene_field_selection_list_rescan().

GB_ERROR GBT_add_new_experiment_changekey	(	GBDATA *	gb_main,
		const char *	name,
		GB_TYPES	type
	)

Definition at line 141 of file adChangeKey.cxx.

References CHANGE_KEY_PATH_EXPERIMENTS, and GBT_add_new_changekey_to_keypath().

Referenced by experiment_field_selection_list_rescan().

GB_ERROR GBT_add_new_changekey	(	GBDATA *	gb_main,
		const char *	name,
		int	type
	)

Definition at line 145 of file adChangeKey.cxx.

References GBT_add_new_species_changekey().

GB_ERROR GBT_add_alignment_changekeys	(	GBDATA *	gb_main,
		const char *	ali
	)

add changekeys for alignment 'ali'

Definition at line 155 of file adChangeKey.cxx.

References error(), GB_STRING, GBS_global_string_copy(), and GBT_add_new_species_changekey().

Referenced by ALI_translate_marked(), concatenateAlignments(), copy_rename_handler(), create_ali_handler(), gene_extract_handler(), MG_copy_and_check_alignments(), MG_equal_alignments(), PV_WriteTranslatedSequenceToDB(), and split_alignment().

static GB_ERROR write_int_converted	(	GBDATA *	gbfield,
		const char *	data,
		bool	trimmed,
		size_t *	rounded
	)

static

Definition at line 164 of file adChangeKey.cxx.

References error(), GB_write_int(), GBS_global_string(), GBS_trim(), and NULp.

Referenced by GBT_write_int_converted().

static GB_ERROR write_float_converted	(	GBDATA *	gbfield,
		const char *	data,
		bool	trimmed
	)

static

Definition at line 201 of file adChangeKey.cxx.

References error(), GB_write_float(), GBS_global_string(), GBS_trim(), and NULp.

Referenced by GBT_write_float_converted().

GB_ERROR GBT_write_int_converted	(	GBDATA *	gb_int_writable,
		const char *	data,
		size_t *	rounded
	)

Definition at line 224 of file adChangeKey.cxx.

References write_int_converted().

Referenced by GBT_convert_changekey().

GB_ERROR GBT_write_float_converted	(	GBDATA *	gb_float_writable,
		const char *	data
	)

Definition at line 228 of file adChangeKey.cxx.

References write_float_converted().

Referenced by GBT_convert_changekey().

GB_ERROR GBT_convert_changekey	(	GBDATA *	gb_main,
		const char *	name,
		GB_TYPES	target_type
	)

Functions

Function Documentation