ARB
CompactedSubSequence Member List

This is the complete list of members for CompactedSubSequence, including all inherited members.

CompactedSubSequence(const char *seq, int length_, const char *name_, int start_offset=0)CompactedSubSequenceinline
CompactedSubSequence(const CompactedSubSequence &other)CompactedSubSequenceinline
CompactedSubSequence(const CompactedSubSequence &other, int rel_pos, int length_)CompactedSubSequenceinline
compPosition(int xPos) const CompactedSubSequenceinline
DECLARE_ASSIGNMENT_OPERATOR(CompactedSubSequence)CompactedSubSequence
expdLength() const CompactedSubSequenceinline
expdPosition(int cPos) const CompactedSubSequenceinline
expdStartPosition() const CompactedSubSequenceinline
firstDotPosition() const CompactedSubSequenceinline
gapsBefore(int offset=0) const CompactedSubSequenceinline
length() const CompactedSubSequenceinline
may_refer_to_same_part_as(const CompactedSubSequence &other) const CompactedSubSequenceinline
name() const CompactedSubSequenceinline
nextDotPosition() const CompactedSubSequenceinline
no_of_gaps_after(int cPos) const CompactedSubSequenceinline
no_of_gaps_before(int cPos) const CompactedSubSequenceinline
operator[](int i) const CompactedSubSequenceinline
text() const CompactedSubSequenceinline
text(int i) const CompactedSubSequenceinline
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