Include dependency graph for ed4_edit_string.hxx:
This graph shows which files directly or indirectly include this file:
Go to the source code of this file.
Classes | |
| struct | ED4_work_info |
| class | ED4_Edit_String |
Functions | |
| bool | ED4_is_gap_character (char chr) |
| void | ED4_setup_gaps_and_alitype (const char *gap_chars, GB_alignment_type alitype) |
Variables | |
| const char | SEQ_POINT = '.' |
Function Documentation
|
inline |
Definition at line 25 of file ed4_edit_string.hxx.
References BaseFrequencies::isGap(), and safeCharIndex().
Referenced by createDataFromConsensus(), SearchTreeNode::findMatches(), has_base_at::fulfilled_by(), is_consensus_gap(), unalign_op::operate(), perform_block_operation_on_part_of_sequence(), perform_block_operation_on_whole_sequence(), and TranslateGeneToAminoAcidSequence().
| void ED4_setup_gaps_and_alitype | ( | const char * | gap_chars, |
| GB_alignment_type | alitype | ||
| ) |
Definition at line 253 of file ED4_main.cxx.
References BaseFrequencies::setup().
Referenced by ED4_gap_chars_changed().
Variable Documentation
| const char SEQ_POINT = '.' |
Definition at line 23 of file ed4_edit_string.hxx.
