arb_strbuf.cxx File Reference

#include "arb_strbuf.h"

Include dependency graph for arb_strbuf.cxx:

Go to the source code of this file.

Functions
GBS_strstruct *	GBS_stropen (long init_size)
char *	GBS_strclose (GBS_strstruct *strstr)
void	GBS_strforget (GBS_strstruct *strstr)
char *	GBS_mempntr (GBS_strstruct *strstr)
long	GBS_memoffset (GBS_strstruct *strstr)
void	GBS_str_cut_tail (GBS_strstruct *strstr, size_t byte_count)
void	GBS_strncat (GBS_strstruct *strstr, const char *ptr, size_t len)
void	GBS_strcat (GBS_strstruct *strstr, const char *ptr)
void	GBS_strnprintf (GBS_strstruct *strstr, long maxlen, const char *templat,...)
void	GBS_chrcat (GBS_strstruct *strstr, char ch)
void	GBS_chrncat (GBS_strstruct *strstr, char ch, size_t n)
void	GBS_intcat (GBS_strstruct *strstr, long val)
void	GBS_floatcat (GBS_strstruct *strstr, double val)

Variables
static GBS_strstruct	last_used

Function Documentation

GBS_strstruct* GBS_stropen

(

long

init_size

)

create a new memory file

Parameters

init_size

estimated used size

Definition at line 39 of file arb_strbuf.cxx.

References GBS_strstruct::alloc_mem(), arb_assert, GBS_strstruct::get_buffer_size(), GBS_strstruct::reassign_mem(), and GBS_strstruct::release_mem().

Referenced by aed_start_naligning(), AP_probe_design_event(), ARB_main(), arb_shell_expand(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), collectIntFunResults(), complete_newick_comment(), GBL_streams::concatenated(), do_extract_words(), ED4_init_notFoundMessage(), ed_submit_info_event(), filter_columnstat_SAIs(), filter_seq(), g_b_undo_info(), g_bs_get_string_of_tag_hash(), g_bs_read_tagged_hash(), GB_find_executable(), GB_read_fp(), gbl_exec(), gbl_merge(), gbl_readdb(), gbl_translate(), GBS_eval_env(), GBS_fread_string(), GBS_hashtab_2_string(), GBS_log_action_to(), GBS_regreplace(), GBS_replace_tabs_by_spaces(), GBT_commit_rename_session(), GBT_join_strings(), GBT_store_marked_species(), GEN_write_position(), AW_selection_list::get_content_as_string(), get_match_hinfo_formatted(), get_match_info_formatted(), match_string(), MG_diff_strings(), MP_all_species_string(), MP_match_string(), Package::Package(), pd_get_the_gene_names(), pd_get_the_names(), PT_find_exProb(), ptpd_read_names(), ArbImporter::read_data(), MG_remap::remap(), remove_by_tab(), PT_FamilyFinder::results2string(), AP_pos_var::save_aliEntry_to_SAI(), SEC_xstring_to_foldedHelixList(), set_field_of_queried_cb(), set_suffix(), sina_start(), st_ml_add_quality_string_to_species(), stream2str(), GBL_IMPL::trace_params(), TreeAdmin::tree_append_remark(), and write_entry().

char* GBS_strclose

(

GBS_strstruct *

strstr

)

Definition at line 69 of file arb_strbuf.cxx.

References GBS_strforget(), and GBS_strstruct::get_copy().

Referenced by aed_start_naligning(), AP_probe_design_event(), ARB_main(), arb_shell_expand(), collectIntFunResults(), complete_newick_comment(), GBL_streams::concatenated(), do_extract_words(), ed_submit_info_event(), filter_columnstat_SAIs(), filter_seq(), g_b_undo_info(), g_bs_get_string_of_tag_hash(), g_bs_read_tagged_hash(), GB_find_executable(), GB_read_fp(), gbl_exec(), gbl_merge(), gbl_readdb(), gbl_translate(), GBS_eval_env(), GBS_fread_string(), GBS_hashtab_2_string(), GBS_log_action_to(), GBS_regreplace(), GBS_replace_tabs_by_spaces(), GBT_commit_rename_session(), GBT_join_strings(), GBT_store_marked_species(), GEN_write_position(), AW_selection_list::get_content_as_string(), get_match_hinfo_formatted(), get_match_info_formatted(), match_string(), MG_diff_strings(), MP_all_species_string(), MP_match_string(), pd_get_the_gene_names(), pd_get_the_names(), PT_find_exProb(), ptpd_read_names(), ArbImporter::read_data(), MG_remap::remap(), remove_by_tab(), PT_FamilyFinder::results2string(), SEC_xstring_to_foldedHelixList(), set_field_of_queried_cb(), set_suffix(), stream2str(), GBL_IMPL::trace_params(), and write_entry().

void GBS_strforget

(

GBS_strstruct *

strstr

)

Definition at line 76 of file arb_strbuf.cxx.

References GBS_strstruct::get_buffer_size(), and GBS_strstruct::reassign_mem().

Referenced by awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), ED4_finish_and_show_notFoundMessage(), GBS_eval_env(), GBS_regreplace(), GBS_strclose(), GBT_commit_rename_session(), pd_get_the_gene_names(), AP_pos_var::save_aliEntry_to_SAI(), SEC_xstring_to_foldedHelixList(), sina_start(), st_ml_add_quality_string_to_species(), TreeAdmin::tree_append_remark(), and Package::~Package().

char* GBS_mempntr

(

GBS_strstruct *

strstr

)

Definition at line 86 of file arb_strbuf.cxx.

References GBS_strstruct::get_data().

Referenced by awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), ED4_finish_and_show_notFoundMessage(), Package::print_xsubs(), MG_remap::remap(), AP_pos_var::save_aliEntry_to_SAI(), set_suffix(), sina_start(), st_ml_add_quality_string_to_species(), stream2str(), and TreeAdmin::tree_append_remark().

long GBS_memoffset

(

GBS_strstruct *

strstr

)

Definition at line 91 of file arb_strbuf.cxx.

References GBS_strstruct::get_position().

Referenced by match_string(), MP_all_species_string(), MP_match_string(), nt_build_conf_string_rek(), pd_get_the_gene_names(), pd_get_the_names(), MG_remap::remap(), and stream2str().

void GBS_str_cut_tail	(	GBS_strstruct *	strstr,
		size_t	byte_count
	)

Definition at line 96 of file arb_strbuf.cxx.

References GBS_strstruct::cut_tail().

Referenced by GBT_store_marked_species(), nt_build_conf_string_rek(), pd_get_the_gene_names(), pd_get_the_names(), PT_FamilyFinder::results2string(), and stream2str().

void GBS_strncat	(	GBS_strstruct *	strstr,
		const char *	ptr,
		size_t	len
	)

Definition at line 101 of file arb_strbuf.cxx.

References GBS_strstruct::ncat().

Referenced by Package::append_code(), filter_seq(), GBS_eval_env(), GBS_floatcat(), GBS_intcat(), GBS_regreplace(), GBS_spaces(), MG_diff_strings(), nt_build_sai_string_by_hash(), and set_field_of_queried_cb().

void GBS_strcat	(	GBS_strstruct *	strstr,
		const char *	ptr
	)

Definition at line 108 of file arb_strbuf.cxx.

References GBS_strstruct::cat().

Referenced by aed_start_naligning(), AP_probe_design_event(), append_named_value(), ARB_main(), arb_shell_expand(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), cat_internal(), GBL_streams::concatenated(), do_extract_words(), ED4_finish_and_show_notFoundMessage(), ed_submit_info_event(), EDB_root_bact::fill_data(), filter_columnstat_SAIs(), g_b_undo_info(), g_bs_merge_tags(), GB_find_executable(), gbl_exec(), gbl_merge(), gbl_readdb(), GBS_eval_env(), GBS_log_action_to(), GBS_regreplace(), GBT_append_to_config_string(), GBT_join_strings(), GBT_store_marked_species(), GEN_write_position(), AW_selection_list::get_content_as_string(), get_match_hinfo_formatted(), get_match_info_formatted(), match_string(), MG_diff_strings(), MP_all_species_string(), MP_match_string(), nt_build_conf_marked(), nt_build_conf_string_rek(), nt_build_sai_string(), nt_build_sai_string_by_hash(), pd_get_the_gene_names(), pd_get_the_names(), PT_find_exProb(), ptpd_read_names(), ArbImporter::read_data(), SEC_xstring_to_foldedHelixList(), set_suffix(), sina_start(), st_ml_add_quality_string_to_species(), GBL_IMPL::trace_params(), TreeAdmin::tree_append_remark(), and write_entry().

void GBS_strnprintf	(	GBS_strstruct *	strstr,
		long	maxlen,
		const char *	templat,
			...
	)

Definition at line 113 of file arb_strbuf.cxx.

References va_start(), and GBS_strstruct::vnprintf().

Referenced by PT_FamilyFinder::results2string(), SEC_xstring_to_foldedHelixList(), streamIntFunResults(), and streamIntFunResultsInBrackets().

void GBS_chrcat	(	GBS_strstruct *	strstr,
		char	ch
	)

Definition at line 119 of file arb_strbuf.cxx.

References GBS_strstruct::put().

Referenced by aed_start_naligning(), AP_probe_design_event(), Package::append_code(), ARB_main(), arb_shell_expand(), awt_create_select_filter_window_aw_cb(), awtc_nn_search_all_listed(), cat_internal(), complete_newick_comment(), do_extract_words(), filter_seq(), g_b_undo_info(), GB_read_fp(), gbl_exec(), gbl_translate(), GBS_fread_string(), gbs_hash_to_strstruct(), GBS_log_action_to(), GBS_regreplace(), GBS_replace_tabs_by_spaces(), GBT_join_strings(), GBT_store_marked_species(), GEN_write_position(), AW_selection_list::get_content_as_string(), match_string(), MG_diff_strings(), MP_all_species_string(), MP_match_string(), nt_build_conf_marked(), nt_build_conf_string_rek(), nt_build_sai_string(), nt_build_sai_string_by_hash(), pd_get_the_gene_names(), pd_get_the_names(), PT_find_exProb(), ptpd_read_names(), MG_remap::remap(), remove_by_tab(), AP_pos_var::save_aliEntry_to_SAI(), SEC_xstring_to_foldedHelixList(), set_suffix(), st_ml_add_quality_string_to_species(), stream2str(), TreeAdmin::tree_append_remark(), and write_entry().

void GBS_chrncat	(	GBS_strstruct *	strstr,
		char	ch,
		size_t	n
	)

Definition at line 123 of file arb_strbuf.cxx.

References GBS_strstruct::nput().

Referenced by MG_remap::remap().

void GBS_intcat	(	GBS_strstruct *	strstr,
		long	val
	)

Definition at line 127 of file arb_strbuf.cxx.

References buffer, and GBS_strncat().

Referenced by aed_start_naligning(), g_bs_read_tagged_hash(), gbs_hash_to_strstruct(), pd_get_the_gene_names(), pd_get_the_names(), and sina_start().

void GBS_floatcat	(	GBS_strstruct *	strstr,
		double	val
	)

Definition at line 133 of file arb_strbuf.cxx.

References buffer, and GBS_strncat().

Referenced by aed_start_naligning(), AP_pos_var::save_aliEntry_to_SAI(), and sina_start().

Variable Documentation

GBS_strstruct last_used

static

Definition at line 37 of file arb_strbuf.cxx.