#include <arbdb_base.h>#include <arb_assert.h>
Include dependency graph for iupac.h:
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Classes | |
| struct | iupac::Nuc_Group |
Namespaces | |
| iupac | |
Enumerations | |
| enum | iupac::Amino_Group { iupac::AA_GROUP_NONE = 0, iupac::AA_GROUP_ALPHA, iupac::AA_GROUP_BETA, iupac::AA_GROUP_GAMMA, iupac::AA_GROUP_DELTA, iupac::AA_GROUP_EPSILON, iupac::AA_GROUP_ZETA, iupac::AA_GROUP_ILLEGAL, iupac::AA_GROUP_COUNT = AA_GROUP_ILLEGAL } |
Functions | |
| Amino_Group | iupac::get_amino_group_for (char aa) |
| char | iupac::get_amino_consensus_char (Amino_Group ag) |
| int | iupac::to_index (char c) |
| char | iupac::combine (char c1, char c2, GB_alignment_type ali) |
| char | iupac::encode (const char bases[], GB_alignment_type aliType) |
| const char * | iupac::decode (char iupac, GB_alignment_type aliType, bool decode_amino_iupac_groups) |
